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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|51464197
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGWLGTLI QEQFLRVMAF RCCSGKTLVM DQRKNESIVP SITQLEDFLT EHNSNVVWLL  60
   61 VATILSCGWI IYLTYYNSRN VGLILTLVLN RLYKHGYIHI GSFSFSVLSG KVMVREIYYI 120
  121 TEDMSIRIQD GFIIFRWWKM YNPKQKQHDP KAETRLYITV NDFEFHVYNR SDLYGRLQEL 180
  181 FGLEPTIIPP KKDDDKTREI GRTRTQSKIE RVKVKTESQD PTSSWRSLIP VIKVNVSTGR 240
  241 LAFGNHYQPQ TLCINFDDAF LTYTTKPPSS HLDQFMHIVK GKLENVRVML VPSPRYVGLQ 300
  301 NDEPPRLMGE GFVVMQSNDV DIYYYMDEPG LVPEETEENI EGEMSSEDCK LQDLPPCWGL 360
  361 DIVCGKGTDF NYGPWADRQR DCLWKFFFPP DYQVLKVSEI AQPGRPRQIL AFELRMNIIA 420
  421 DATIDLLFTK NRETNAVHVN VGAGSYLEIN IPMTVEENGY TPAIKGQLLH VDATTSMQYR 480
  481 TLLEAEMLAF HINASYPRIW NMPQTWQCEL EVYKATYHFI FAQKNFFTDL IQDWSSDSPP 540
  541 DIFSFVPYTW NFKIMFHQFE MIWAANQHNW IDCSTKQQEN VYLAACGETL NIDFSLPFTD 600
  601 FVPATCNTKF SLRGEDVDLH LFLPDCHPSK YSLFMLVKNC HPNKMIHDTG IPAECQSGQK 660
  661 TVKPKWRNVT QEKSGWVECW TVPSVMLTID YTWHPIYPQK ADEQLKQSLS EMEETMLSVL 720
  721 RPSQKTSDRV VSSPSTSSRP PIDPSELPPD KLHVEMELSP DSQITLYGPL LNAFLCIKEN 780
  781 YFGEDDMYMD FEEVISSPVL SLSTSSSSGW TAVGMENDKK ENEGSAKSIH PLALRPWDIT 840
  841 VLVNLYKVHG RLPVHGTTDG PECPTAFLER LCFEMKKGFR ETMLQLILSP LNVFVSDNYQ 900
  901 RPPVDEVLRE GHINLSGLQL RAHAMFSAEG LPLGSDSLEY AWLIDVQAGS LTAKVTAPQL 960
  961 ACLLEWGQTF VFHVVCREYE LERPKSVIIC QHGIDRRFCE SKLSCIPGPC PTSDDLKYTM1020
 1021 IRLAVDGADI YIVEHGCATN IKMGAIRVAN CNLHNQSVGE GISAAIQDFQ VRQYIEQLNN1080
 1081 CRIGLQPAVL RRAYWLEAGS ANLGLITVDI ALAADHHSKH EAQRHFLETH DARTKRLWFL1140
 1141 WPDDILKNKR CRNKCGCLGG CRFFGGTVTG LDFFKLEELT PSSSSAFSST SAESDMYYGQ1200
 1201 SLLQPGEWII TKEIPKIIDG NVNGMKRKEW ENKSVGIEVE RKTQHLSLQV PLRSHSSSSS1260
 1261 SEENSSSSAA QPLLAGEKES PSSVADDHLV QKEFLHGTKR DDGQASIPTE ISGNSPVSPN1320
 1321 TQDKSVGQSP LRSPLKRQAS VCSTRLGSTK SLTAAFYGDK QPVTVGVQFS SDVSRSDENV1380
 1381 LDSPKQRRSF GSFPYTPSAD SNSFHQYRSM DSSMSMADSE AYFSAAEEFE PISSDEGPGT1440
 1441 YPGRKKKKKQ TQQIDYSRGS IYHSVEGPLT GHGESIQDSR TLPFKTHPSQ ASFVSALGGE1500
 1501 DDVIEHLYIV EGEKTVESEQ ITPQQPVMNC YQTYLTQFQV INWSVKHPTN KRTSKSSLHR1560
 1561 PLDLDTPTSE ESSSSFEQLS VPTFKVIKQG LTANSLLDRG MQLSGSTSNT PYTPLEKKLA1620
 1621 DNTDDETLTE EWTLDQPVSQ TRTTAIVEVK GTVDIVLTPL VAEALDRYIE AMVHCASTRH1680
 1681 PAAIVDDLHA KVLREAVQNS KTTFSENLSS KQDIRGTKTE QSTIGTTNQG QAQTNLTMKQ1740
 1741 DNVTIKGLQT NVSIPKVNLC LLQASVEESP TTAPSRSVTH VSLVALCFDR IATQVRMNRG1800
 1801 VVEETSNNAE PGRTSNFDRY VHATKMQPQS SGSLRSNAGA EKGKEIAAKL NIHRVHGQLR1860
 1861 GLDTTDIGTC AITAIPFEKS KVLFTLEELD EFTFVDETDQ QAVPDVTRIG PSQEKWGWIM1920
 1921 FECGLENLTI KGGRQSGAVL YNSFGIMGKA SDTERGGVLT SNNSSDSPTG SGYNTDVSDD1980
 1981 NLPCDRTSPS SDLNGNSVSD EQDEGVESDD LKKDLPLMPP PPDSCSMKLT IKEIWFSFAA2040
 2041 PTNVRSHTHA FSRQLNLLST ATPAVGAWLV PIDQLKSSLN KLETEGTLRI CAVMGCIMTE2100
 2101 ALENKSVHFP LRSKYNRLTK VARFLQENPS CLLCNILHHY LHQANYSIID DATMSDGLPA2160
 2161 LVTLKKGLVA LARQWMKFIV VTPAFKGVSL HRPAQPLKPQ IAMDHEHEDG LGLDNGGGLQ2220
 2221 SDTSADGAEF EFDAATVSEH TMLLEGTANR PPPGSSGPVT GAEIMRKLSK THTHSDSALK2280
 2281 IKGIHPYHSL SYTSGDTATD SPVHVGRAGM PVKDSPRKES LLSYLTGSFP SLHNLLEGTP2340
 2341 QRSSAAVKSS SLTRTGNTVA TDMLSEHPLL SEPSSVSFYN WMSNAVGNRG SVLQESPVTK2400
 2401 SGHNSLPTGV APNLPTIPSA SDFNTVLSSD QNTLDGTHSQ HSTSQDDVAG VEEANQGFPA2460
 2461 VQLADAQVVF KPLLSHTGIQ SQDTMPFCYR MYFGEHLSFS GTLDCLRADI VDSDTAKERK2520
 2521 GKRARRQGHV NLPPLEFKPA LMLGTFSISA VVMEKSVCTP QNSTSALSFH DLSKRYYNTF2580
 2581 HCNFTISCQS ISQHVDMALV RLIHQFSTMI DDIKATQTDI KLSRYTAGSA SPTPTFKTRK2640
 2641 HRDFRSSDFS RSSRGSLNGG NRVNNAKNKR TNNENNKKES RNKNSLGRSE RRTSKVSRKG2700
 2701 SKDVVDHMTI HMDDSDSITV SEQSEPSAEC WQNMYKLLNF YSLISDPTGI LEKSSETFGP2760
 2761 AGVRSPTEPT CKVVFENEQD NSSLTKTQRK RSLVTSEPQH VTLIVFGIGM VNRTHLEADI2820
 2821 GGLTMESELK RIHGSFTLKE KMKDVLHQKM TETCATAHIG GVNIVLLEGI TPNIQLEDFP2880
 2881 TSPTSTAKQE FLTVVKCSIA KSQALYSAQR GLKTNNAAVF KVGAISINIP QHPATLHSMM2940
 2941 VRSSHQLSKQ ISDLIRQPST APQPVKEDIA TPLPSEKTPT SVNQTPVETN EFPQLPEGLE3000
 3001 KKPIVLKFSA MLDGIAIGAA LLPSLKAEYK MGRMRSHGMT GAQTRFTFEL PNHRLRFTSK3060
 3061 VSATDMSTIP PSASLNLPPV TMSGKYIMEE HDSYSDQVWS IDELPSKQGY YLQGNYLRCV3120
 3121 AEVGSFEHNL TTDLLNHLVF VQKVFMKEVN EVIQKVSGGE QPIPLWNEHD GTADGDKPKI3180
 3181 LLYSLNLQFK GIQVTATTPS MRAVRFETGL IELELSNRLQ TKASPGSSSY LKLFGKCQVD3240
 3241 LNLALGQIVK HQVYEEAGSD FHQVAYFKTR IGLRNALREE ISGSSDREAV LITLNRPIVY3300
 3301 AQPVAFDRAV LFWLNYKAAY DNWNEQRMAL HKDIHMATKE VVDMLPGIQQ TSAQAFGTLF3360
 3361 LQLTVNDLGI CLPITNTAQS NHTGDLDTGS ALVLTIESTL ITACSSESLV SKGHFKNFCI3420
 3421 RFADGFETSW DDWKPEIHGD LVMNACVVPD GTYEVCSRTT GQAAAESSSA GTWTLNVLWK3480
 3481 MCGIDVHMDP NIGKRLNALG NTLTTLTGEE DIDDIADLNS VNIADLSDED EVDTMSPTIH3540
 3541 TEATDYRRQA ASASQPGELR GRKIMKRIVD IRELNEQAKV IDDLKKLGAS EGTINQEIQR3600
 3601 YQQLESVAVN DIRRDVRKKL RRSSMRAASL KDKWGLSYKP SYSRSKSISA SGRPPLKRME3660
 3661 RASSRVGETE ELPEIRVDAA SPGPRVTFNI QDTFPEETEL DLLSVTIEGP SHYSSNSEGS3720
 3721 CSVFSSPKTP GGFSPGIPFQ TEEGRRDDSL SSTSEDSEKD EKDEDHERER FYIYRKPSHT3780
 3781 SRKKATGFAA VHQLFTERWP TTPVNRSLSG TATERNIDFE LDIRVEIDSG KCVLHPTTLL3840
 3841 QEHDDISLRR SYDRSSRSLD QDSPSKKKKF QTNYASTTHL MTGKKVPSSL QTKPSDLETT3900
 3901 VFYIPGVDVK LHYNSKTLKT ESPNASRGSS LPRTLSKESK LYGMKDSATS PPSPPLPSTV3960
 3961 QSKTNTLLPP QPPPIPAAKG KGSGGVKTAK LYAWVALQSL PEEMVISPCL LDFLEKALET4020
 4021 IPITPVERNY TAVSSQDEDM GHFEIPDPME ESTTSLVSSS TSAYSSFPVD VVVYVRVQPS4080
 4081 QIKFSCLPVS RVECMLKLPS LDLVFSSNRG ELETLGTTYP AETLSPGGNA TQSGTKTSAS4140
 4141 KTGIPGSSGL GSPLGRSRHS SSQSDLTSSS SSSSGLSFTA CMSDFSLYVF HPYGAGKQKT4200
 4201 AVSGLTPGSG GLGNVDEEPT SVTGRKDSLS INLEFVKVSL SRIRRSGGAS FFESQSVSKS4260
 4261 ASKMDTTLIN ISAVCDIGSA SFKYDMRRLS EILAFPRAWY RRSIARRLFL GDQTINLPTS4320
 4321 GPGTPDSIEG VSQHLSPESS RKAYCKTWEQ PSQSASFTHM PQSPNVFNEH MTNSTMSPGT4380
 4381 VGQSLKSPAS IRSRSVSDSS VPRRDSLSKT STPFNKSNKA ASQQGTPWET LVVFAINLKQ4440
 4441 LNVQMNMSNV MGNTTWTTSG LKSQGRLSVG SNRDREISMS VGLGRSQLDS KGGVVGGTID4500
 4501 VNALEMVAHI SEHPNQQPSH KIQITMGSTE ARVDYMGSSI LMGIFSNADL KLQDEWKVNL4560
 4561 YNTLDSSITD KSEIFVHGDL KWDIFQVMIS RSTTPDLIKI GMKLQEFFTQ QFDTSKRALS4620
 4621 TWGPVPYLPP KTMTSNLEKS SQEQLLDAAH HRHWPGVLKV VSGCHISLFQ IPLPEDGMQF4680
 4681 GGSMSLHGNH MTLACFHGPN FRSKSWALFH LEEPNIAFWT EAQKIWEDGS SDHSTYIVQT4740
 4741 LDFHLGHNTM VTKPCGALES PMATITKITR RRHENPPHGV ASVKEWFNYV TATRNEELNL4800
 4801 LRNVDANNTE NSTTVKNSSL LSGFRGGSSY NHETETIFAL PRMQLDFKSI HVQEPQEPSL4860
 4861 QDASLKPKVE CSVVTEFTDH ICVTMDAELI MFLHDLVSAY LKEKEKAIFP PRILSTRPGQ4920
 4921 KSPIIIHDDN SSDKDREDSI TYTTVDWRDF MCNTWHLEPT LRLISWTGRK IDPVGVDYIL4980
 4981 QKLGFHHART TIPKWLQRGV MDPLDKVLSV LIKKLGTALQ DEKEKKGKDK EEH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle