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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PGAP1_RAT
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLHSVNLWN LAFYVFMVFL ATLGLWDVFF GFEENKCSMS YMFEYPEYQK IELPKKLTKR  60
   61 YPAYELYLYG EGSYAEEHKI LPLTGIPVLF LPGNAGSYKQ VRSIGSIALR KAEDIDFKYH 120
  121 FDFFSVNFNE ELVALYGGSL QKQTKFVHEC IKAILKLYKG QEFPPTSVAI IGHSMGGLVA 180
  181 RALLTLKNFK QDLINLLVTQ ATPHVAPVMP LDRFITEFYM TVNNYWILNA RHINLTTLSV 240
  241 AGGFRDYQVR SGLTFLPTLS HHTSALSVVT SAVPKTWVST DHLSIVWCKQ LQLTTIRAFF 300
  301 DLIDADTKQI TQKSKKKLSV LNHHFIRHPA KQFEENPSII SDLTGTSMWV PVKVSRWSYV 360
  361 AYNESDKIYF AFPLANHRKV YTHAYCQSTM LDTNSWIFGC INSTSMCRQG VDLSWKAELL 420
  421 PTIKSLTLRL QDYPSLSHIV VYVPSVHGSK FVVDCEFFKK EARSIQLPVT HLFSFGLSSR 480
  481 KAIINTSGRY YNIELLNLGQ IYQAFKVNVV SKCTGGKEEI TSIYKLHIPW SYEDSLTIAQ 540
  541 VPSSVDISLK LHVAQPENDS HVALLKMYTS SDCQYEVTIK TSFPQILGQV VRFHGGALPA 600
  601 YVVSSILLAY GGQLYSLLST GFCLEYGTML DKEAKPYKVD PFVIMIKFLL GYKWFKELWD 660
  661 AVLLPELDAI VLTSQSMCFP LVSLILFLFG TCTAYWSGLL SSASVQLLSS LWLALKRPAE 720
  721 LPKDVKVMSP DLPVLTVVFL IISWTTCGAL AILLSYLYYV FKVVHLQASL TTFKNNQPVN 780
  781 PKHSRRSEKK SNHHKDSAIQ NPRLSANDAE DSLRMHSTVI NLLTWVVLLS MPSLIYWSKN 840
  841 LRYYFKLNPD PCKPLAFLLI PAIAVLGNTH TVSIKSSKLL KTASQFPLPL AVGVIAFGSS 900
  901 HLYRVPCFVI IPLVFHSLCN FM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle