YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERMP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.56
Transmembrane Helix	65	82	0.38
Non-Cytoplasmic	83	404	0.79
Transmembrane Helix	405	427	0.80
Cytoplasmic	428	443	0.80
Transmembrane Helix	444	472	0.82
Non-Cytoplasmic	473	480	0.73
Transmembrane Helix	481	500	0.94
Cytoplasmic	501	514	0.67
Transmembrane Helix	515	536	0.77
Non-Cytoplasmic	537	540	0.50
Transmembrane Helix	541	562	0.82
Cytoplasmic	563	573	0.95
Transmembrane Helix	574	595	0.95
Non-Cytoplasmic	596	614	0.93
Transmembrane Helix	615	638	0.92
Cytoplasmic	639	645	0.88
Transmembrane Helix	646	668	0.93
Non-Cytoplasmic	669	898	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWSSESAAV RRHRGTAERR EGQAAASHPQ REASAQEDAR GGGRMRGRTE SGGESRGAKT  60
   61 ALSEARTALA LALYLLALRA LVQLSLQRLV LSRTSGLQGE FDARQARVYL EHITAIGPRT 120
  121 TGSAENEILT VQYLLEQITL IEEQSNSLHR ISVDVQRPTG SFSIDFLGGF TSYYDNITNV 180
  181 VVKLEPQDGA KYAVLANCHF DSVANSPGAS DDAVSCAVML EVLRVMAASP EPLQHAVVFL 240
  241 FNGAEENVLQ ASHGFITQHP WASLIRAFIN LEAAGVGGKE LVFQTGPENP WLVQAYVSAA 300
  301 KHPFASVVAQ EVFQSGIIPS DTDFRIYRDF GNIPGIDLAF IENGYIYHTK YDTADRILID 360
  361 SIQRAGDNIL AVLKYLATSD MLASSSEYRH GSMVFFDVLG LLVIAYPSRV GSIINYMVVM 420
  421 AVVLYLGRKL LRPNHSNSNY VRDFLCGLGI TFISWFTSLV TVLIIAVFVS LIGQSLSWYN 480
  481 YFYIAVCLYG TATVAKIILI HTLAKRFYYV NASDLYLGEL FFDTSLFVHC GFLVALTAQG 540
  541 FCSAFMSAVW VAFPLLTKLC VYKDFKKHGA KGRFIALYLL GMFIPYLYGL YLIWAVFEMF 600
  601 TPILGRSGSE IPPDVVLASI LAVCVMILSS YFITFIYLVN STKKTILTLI LVCAVTFLLV 660
  661 CSGAFFPYSS NPDSPKPKRV FLQHVSRTFH NLEGSVVKRD SGIWINGFDY TGMSHVTPHI 720
  721 PEINDTIRAH CEENAPLCGF PWYLPVHFLI RKNWYLPAPE ISPRNPAHFR LVSKEKMPWD 780
  781 SIKLTFEATG PSHMSFYVRT HKGSTLSQWS LGNGIPVTSR GGDYFVFYSH GLQASAWQFW 840
  841 IEVQVSEEQP EGMVTVAIAA HYLSGENKRS SQLDALKEKF PDWSFPSAWV STYSLFVF