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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PODXL_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPTLALSAL LLLQLLLLST PSLSQDNGNK TDTSDITSID QNQDKPATNQ PSNATPKSSV  60
   61 QPPTPTSIST SSPDPKATQS SNSSVTTTSD STTDRTSSST STVPTTSNSG QTVSSGGKSS 120
  121 DKITTALPTT LGPVNASSQP TDLNTSTKLP STPTTNSTAS PHQPVSHSEG QHTTVQSSSA 180
  181 SVSSSDNTTL LWILTTSKPT GTSEGTQPIA ISTPGITTPV STPLQPTGSP GGTESVPTTE 240
  241 EFTHSTSSWT PVVSQGPSTP SSTWTSGSYK LKCDPAIKPH EELLILNLTR DSFCKGSPPN 300
  301 ERFLELLCHS AKASFKPAED SCALELAPIL DNQAVAVKRI VIETKLSPKA VFELLKDKWD 360
  361 DLTEAGVIDI HLGKEGPPEV NEDRFSLPLI ITIVCMASFL LLVAALYGCC HQRISQRKDQ 420
  421 QRLTEELQTV ENGYHDNPTL EVMETPSEMQ EKKVVNLNGE LGDSWIVPLD NLTKEDLDEE 480
  481 EDTHL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle