YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WLS_RAT
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAIIENMS TKKLCIVGGI LLVFQIVAFL VGGLIAPAPT TAVSYVAAKC VDVRKNHHKT  60
   61 RWLMPWGPNK CNKINDFEEA IPREIEANDI VFSVHIPLPS MEMSPWFQFM LFILQIDIAF 120
  121 KLNNQIRENA EVSMDVSLGY RDDMFSEWTE MAHERVPRKL RCTFTSPKTP EHEGRHYECD 180
  181 VLPFMEIGSV AHKYYLLNIR LPVNEKKKIN VGIGEIKDIR LVGIHQNGGF TKVWFAMKTF 240
  241 LTPSIFIIMV WYWRRITMMS RPPVLLEKVI FALGISMTFI NIPVEWFSIG FDWTWMLLFG 300
  301 DIRQGIFYAM LLSFWIIFCG EHMMDQHERN HIAGYWKQVG PIAVGSFCLF IFDMCERGVQ 360
  361 LTNPFYSIWT TDVGTELAMA FIIVAGICLC LYFLFLCFMV FQVFRNISGK QSSLPAMSKV 420
  421 RRLHYEGLIF RFKFLMLITL ACAAMTVIFF IVSQVTEGHW KWGGVTVQVS SAFFTGIYGM 480
  481 WNLYVFALMF LYAPSHKNYG EDQSNGDLGV HSGEELQLTT TITHVDGPTE IYKLTRKEAQ 540
  541 E

Type	Start	End	Confidence
Cytoplasmic	1	13	0.92
Transmembrane Helix	14	36	0.89
Non-Cytoplasmic	37	233	0.92
Transmembrane Helix	234	253	0.91
Cytoplasmic	254	263	0.92
Transmembrane Helix	264	287	0.83
Non-Cytoplasmic	288	303	0.79
Transmembrane Helix	304	324	0.85
Cytoplasmic	325	333	0.94
Transmembrane Helix	334	355	0.88
Non-Cytoplasmic	356	376	0.91
Transmembrane Helix	377	401	0.90
Cytoplasmic	402	428	0.93
Transmembrane Helix	429	452	0.91
Non-Cytoplasmic	453	470	0.80
Transmembrane Helix	471	492	0.85
Cytoplasmic	493	541	0.98