YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DPEP1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIIWWFWSL LAICASDSFR NQAENIMRTT PVIDGHNDLP WQMLTLFNNQ LRKSEANLSA  60
   61 LAETHTNIPK LRAGFVGGQF WSAYMPCDTQ NKDAVKRILE QIDVIHRMCQ LYPETFECVT 120
  121 NSSDILQAFR RGKVASLIGV EGGHLIDSSL GVLRTLYHLG MRYLTLTHNC NTPWADNWLV 180
  181 DKGDDEAESQ GLSPFGKLVL NEMNRLGVMI DLSHVSVATM KDALQLSKAP VIFSHSSAYS 240
  241 VCPHRRNVPD DVLQLVKSTN SLVMVNFYNQ FVSCSDSATL SQVADHLDHI KKVAGAGAVG 300
  301 LGGDYDGVTN LPVGLEDVSK YPDLIAELLR RNWTETEVRG LLAENLLRVF SAVELVSNIM 360
  361 QVPEEETIPV EKLDGSCRTF YGHSRAPSIH LQIGALLASL ASLVFSLHLL

Type	Start	End	Confidence
Signal Peptide	1	18	0.92
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	388	0.97
Transmembrane Helix	389	409	0.71
Cytoplasmic	410	410	0.74