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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SGSM3_RAT
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNHTPSAS GPFSALTPSI WPQEILAKSS QKEDSSEPEI CYDEFGFRVD KEGSEPGCSQ  60
   61 MAGTPLVEDP PQRLRWQAHL EFTHNHDVGD LTWDKIAVSL PRSEKLRSLV LAGIPHGMRP 120
  121 QLWMRLSGAL QKKKNSELSY REIVKNSSND ETIAAKQIEK DLLRTMPSNA CFANVNSIGV 180
  181 PRLRRVLRAL AWLYPEIGYC QGTGMVAACL LLFLEEEDAF WMMCAIIEDL LPASYFSTTL 240
  241 LGVQTDQRVL RHLIVQYLPR LDKLLQEHDI ELSLITLHWF LTAFASVVHI RLLLRIWDLF 300
  301 FYEGSLVLFQ TTLGMLRLKE EELIQSENSA SIFNTLSDIP AQMDDAELLL GEAMQLAGSL 360
  361 TDVAVETQRR KHLAYLIADQ GQTLGTSTTT SLSQVVRRRT QRRKSGITSL LFGEDDLEAL 420
  421 KAKNIKQTEL VADLREAILR VARHFQCTDP KNCSVELTPD YSMESHQRDH ENYVACLRSH 480
  481 RRRAKALLDF ERHDDDELGF RKNDIITIIS QKDEHCWVGE LNGLRGWFPA KFVEVLDERS 540
  541 KEYSIAGDDS VTEGVTDLVR GTLCPALKAL FEHGLKKPSL LGGACHPWLF IEEAAGREVE 600
  601 RDFDSVYSRL VLCKTYRLDE DGKVLTPEEL LYRAVQSVNV THDAAHAQMD VKLRSLICVG 660
  661 LNEQVLHLWL EVLCSSLPTV EKWYQPWSFL RSPGWVQIKC ELRVLCCFAF SLSQDWELPA 720
  721 KREEEKQPLK EGVQDMLVKH HLFSWDIDG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle