YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149053392, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLVLLLWT GALLGHGSSQ NVPDSSQDSP APDSTGEPVV EEDDPFFKAP VNKLAAAVSN  60
   61 FGYDLYRLRS GAVSTGNILL SPLSVATALS ALSLGAEQRT ESVIHRALYY DLINNPDIHS 120
  121 TYKELLASVT APEKNFKSAS RIVFERKLRV KSSFVAPLEK SYGTRPRILT GNPRIDLQEI 180
  181 NNWVQAQMKG KIARSTREMP SALSILLLGV AYFKGQWATK FDSRKTTLQD FHLDEDRTVR 240
  241 VPMMSDPKAI LRYGLDSDLN CKIAQLPLTG SMSIIFFLPL TVTQNLTMIE ESLTSEFVHD 300
  301 IDRELKTIQA VLTVPKLKLS YEGDVTNSLQ DMKLQSLFES PDFSKITGKP VKLTQVEHRA 360
  361 AFEWNEEGAG TSSNPDLQPV RLTFPLDYHL NRPFIFVLRD TDTGALLFIG RILDPSST

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	418	0.98