YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN9A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	121	0.97
Transmembrane Helix	122	145	0.89
Non-Cytoplasmic	146	189	0.93
Transmembrane Helix	190	210	0.89
Cytoplasmic	211	220	0.76
Transmembrane Helix	221	240	0.88
Non-Cytoplasmic	241	247	0.79
Transmembrane Helix	248	269	0.93
Cytoplasmic	270	377	0.84
Transmembrane Helix	378	404	0.85
Non-Cytoplasmic	405	737	0.61
Transmembrane Helix	738	760	0.86
Cytoplasmic	761	773	0.74
Transmembrane Helix	774	796	0.87
Non-Cytoplasmic	797	812	0.76
Transmembrane Helix	813	836	0.79
Cytoplasmic	837	856	0.80
Transmembrane Helix	857	881	0.88
Non-Cytoplasmic	882	912	0.81
Transmembrane Helix	913	932	0.75
Cytoplasmic	933	942	0.79
Transmembrane Helix	943	966	0.91
Non-Cytoplasmic	967	1194	0.91
Transmembrane Helix	1195	1214	0.85
Cytoplasmic	1215	1229	0.83
Transmembrane Helix	1230	1246	0.86
Non-Cytoplasmic	1247	1260	0.68
Transmembrane Helix	1261	1282	0.80
Cytoplasmic	1283	1306	0.81
Transmembrane Helix	1307	1333	0.88
Non-Cytoplasmic	1334	1431	0.74
Transmembrane Helix	1432	1455	0.90
Cytoplasmic	1456	1508	0.76
Transmembrane Helix	1509	1532	0.68
Non-Cytoplasmic	1533	1542	0.64
Transmembrane Helix	1543	1565	0.88
Cytoplasmic	1566	1573	0.54
Transmembrane Helix	1574	1597	0.84
Non-Cytoplasmic	1598	1638	0.56
Transmembrane Helix	1639	1666	0.76
Cytoplasmic	1667	1680	0.63
Transmembrane Helix	1681	1698	0.66
Non-Cytoplasmic	1699	1733	0.69
Transmembrane Helix	1734	1757	0.86
Cytoplasmic	1758	1984	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMLPPPGPQ SFVHFTKQSL ALIEQRISEE KAKEHKDEKK DDEEEGPKPS SDLEAGKQLP  60
   61 FIYGDIPPGM VSEPLEDLDP YYADKKTFIV LNKGKAIFRF NATPALYMLS PFSPLRRISI 120
  121 KILVHSLFSM LIMCTILTNC IFMTLSNPPE WTKNVEYTFT GIYTFESLIK ILARGFCVGE 180
  181 FTFLRDPWNW LDFVVIVFAY LTEFVNLGNV SALRTFRVLR ALKTISVIPG LKTIVGALIQ 240
  241 SVKKLSDVMI LTVFCLSVFA LIGLQLFMGN LKHKCFRKEL EENETLESIM NTAESEEELK 300
  301 KYFYYLEGSK DALLCGFSTD SGQCPEGYIC VKAGRNPDYG YTSFDTFSWA FLALFRLMTQ 360
  361 DYWENLYQQT LRAAGKTYMI FFVVVIFLGS FYLINLILAV VAMAYEEQNQ ANIEEAKQKE 420
  421 LEFQQMLDRL KKEQEEAEAI AAAAAEFTSI GRSRIMGLSE SSSETSRLSS KSAKERRNRR 480
  481 KKKKQKMSSG EEKGDDEKLS KSGSEESIRK KSFHLGVEGH HRTREKRLST PNQSPLSIRG 540
  541 SLFSARRSSR TSLFSFKGRG RDLGSETEFA DDEHSIFGDN ESRRGSLFVP HRPRERRSSN 600
  601 ISQASRSPPV LPVNGKMHSA VDCNGVVSLV DGPSALMLPN GQLLPEVIID KATSDDSGTT 660
  661 NQMRKKRLSS SYFLSEDMLN DPHLRQRAMS RASILTNTVE ELEESRQKCP PWWYRFAHTF 720
  721 LIWNCSPYWI KFKKLIYFIV MDPFVDLAIT ICIVLNTLFM AMEHHPMTEE FKNVLAVGNL 780
  781 IFTGIFAAEM VLKLIAMDPY EYFQVGWNIF DSLIVTLSLI ELFLADVEGL SVLRSFRLLR 840
  841 VFKLAKSWPT LNMLIKIIGN SVGALGNLTL VLAIIVFIFA VVGMQLFGKS YKECVCKINV 900
  901 DCKLPRWHMN DFFHSFLIVF RVLCGEWIET MWDCMEVAGQ TMCLIVYMMV MVIGNLVVLN 960
  961 LFLALLLSSF SSDNLTAIEE DTDANNLQIA VARIKRGINY VKQTLREFIL KSFSKKPKGS1020
 1021 KDTKRTADPN NKKENYISNR TLAEMSKDHN FLKEKDRISG YGSSLDKSFM DENDYQSFIH1080
 1081 NPSLTVTVPI APGESDLEIM NTEELSSDSD SDYSKEKRNR SSSSECSTVD NPLPGEEEAE1140
 1141 AEPVNADEPE ACFTDGCVRR FPCCQVNVDS GKGKVWWTIR KTCYRIVEHS WFESFIVLMI1200
 1201 LLSSGALAFE DIYIEKKKTI KIILEYADKI FTYIFILEML LKWVAYGYKT YFTNAWCWLD1260
 1261 FLIVDVSLVT LVANTLGYSD LGPIKSLRTL RALRPLRALS RFEGMRVVVN ALIGAIPSIM1320
 1321 NVLLVCLIFW LIFSIMGVNL FAGKFYECVN TTDGSRFPTS QVANRSECFA LMNVSGNVRW1380
 1381 KNLKVNFDNV GLGYLSLLQV ATFKGWMDIM YAAVDSVNVN EQPKYEYSLY MYIYFVIFII1440
 1441 FGSFFTLNLF IGVIIDNFNQ QKKKLGGQDI FMTEEQKKYY NAMKKLGSKK PQKPIPRPGN1500
 1501 KFQGCIFDLV TNQAFDITIM VLICLNMVTM MVEKEGQTEY MDYVLHWINM VFIILFTGEC1560
 1561 VLKLISLRHY YFTVGWNIFD FVVVILSIVG MFLAEMIEKY FVSPTLFRVI RLARIGRILR1620
 1621 LIKGAKGIRT LLFALMMSLP ALFNIGLLLF LVMFIYAIFG MSNFAYVKKE AGINDMFNFE1680
 1681 TFGNSMICLF QITTSAGWDG LLAPILNSAP PDCDPKKVHP GSSVEGDCGN PSVGIFYFVS1740
 1741 YIIISFLVVV NMYIAVILEN FSVATEESTE PLSEDDFEMF YEVWEKFDPD ATQFIEFCKL1800
 1801 SDFAAALDPP LLIAKPNKVQ LIAMDLPMVS GDRIHCLDIL FAFTKRVLGE GGEMDSLRSQ1860
 1861 MEERFMSANP SKVSYEPITT TLKRKQEEVS ATIIQRAYRR YRLRQHVKNI SSIYIKDGDR1920
 1921 DDDLPNKEDT VFDNVNENSS PEKTDVTAST ISPPSYDSVT KPDQEKYETD KTEKEDKEKD1980
 1981 ESRK