YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OTOP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.96
Transmembrane Helix	63	82	0.95
Non-Cytoplasmic	83	89	0.82
Transmembrane Helix	90	110	0.94
Cytoplasmic	111	129	0.95
Transmembrane Helix	130	153	0.90
Non-Cytoplasmic	154	164	0.80
Transmembrane Helix	165	184	0.80
Cytoplasmic	185	198	0.71
Transmembrane Helix	199	216	0.70
Non-Cytoplasmic	217	270	0.77
Transmembrane Helix	271	287	0.72
Cytoplasmic	288	307	0.77
Transmembrane Helix	308	332	0.90
Non-Cytoplasmic	333	347	0.75
Transmembrane Helix	348	370	0.92
Cytoplasmic	371	530	0.80
Transmembrane Helix	531	552	0.86
Non-Cytoplasmic	553	566	0.87
Transmembrane Helix	567	585	0.88
Cytoplasmic	586	600	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGDRGALSS PAASSGSPSA APSGIAACPP PPSPLARASP QASGPRRGAS VPQKLAETLS  60
   61 SQYGLNVFVA GLLFLLAWAV HATGVGKSDL LCVLTALMLL QLLWMLWYVG RSYMQRRLIR 120
  121 PKDTHAGARW LRGSITLFAF ITIVLGCLKV AYFIGFSECL SATEGVFPVT HAVHTLLQVY 180
  181 FLWGHAKDII MSFKTLERFG VIHSVFTNLL LWANSVLNES KHQLNEHKER LITLGFGNIT 240
  241 IVLDDHTPQC NCTPPALCSA LSHGIYYLYP FNIEYQILAS TMLYVLWKNI GRRVDSSRHQ 300
  301 KMQCRFDGVL VGSVLGLTVL AATIAVVVVY MIHIGRSKSK SESALIMFYL YAITVLLLMG 360
  361 AAGLVGSWIY RVDEKSLDES KNPARKLDAD LLVATASGSW LLSWGSILAI ACAETRPPYT 420
  421 WYNLPYSVLV IVEKYVQNIF IIESVHLEPE GVPEDVRTLR VVTVCSGEAA ALAASSLGSQ 480
  481 GTAQDGSPAV NGNLHLQQRC EKEDQEADWE GATGTTRCLD FLQGGMKRRL LRNITAFLFL 540
  541 CNISLWIPPA FGCRPEYDNG LEEIVFGFEP WIIVVNLAMP FSIFYRMHAA AALFEVYCKI 600
  601