YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37718695, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.93
Transmembrane Helix	40	62	0.90
Non-Cytoplasmic	63	81	0.87
Transmembrane Helix	82	102	0.92
Cytoplasmic	103	112	0.75
Transmembrane Helix	113	136	0.92
Non-Cytoplasmic	137	175	0.92
Transmembrane Helix	176	196	0.84
Cytoplasmic	197	216	0.80
Transmembrane Helix	217	234	0.95
Non-Cytoplasmic	235	253	0.87
Transmembrane Helix	254	275	0.88
Cytoplasmic	276	293	0.76
Transmembrane Helix	294	315	0.87
Non-Cytoplasmic	316	324	0.76
Transmembrane Helix	325	346	0.91
Cytoplasmic	347	365	0.90
Transmembrane Helix	366	391	0.86
Non-Cytoplasmic	392	405	0.80
Transmembrane Helix	406	432	0.80
Cytoplasmic	433	529	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETNGYLDG AQAQPAARPR TPETGTSKAQ RCASFFRRNA LVLLTVSGVL AGAGMGAALR  60
   61 GLQLTRTQIT YLAFPGEMLL RMLRMIILPL VVCSLVSGAA SLDASSLGRL GGIAVAYFGL 120
  121 TTLSASALAV ALAFIIKPGV GAQTLHSSSL GLENSEPPPV SKETVDSFLD LLRNLFPSNL 180
  181 VVAAFSTSAT SYTVVVHNSS LGNVTKEKIP VVTDVKGMNI LGLVLFALML GVALKKLGPE 240
  241 GDELIRFFNS FNEATMVLVS WIMWYVPIGI MFLIGSKIVE MQDLIVLVTS LGKYIFASIL 300
  301 GHVIHGGIVL PLVYFAFTRK NPFTFLLGLL TPFATAFATC SSSATLPSMM KCIEENNGVD 360
  361 KRISRFILPI GATVNMDGAA IFQCVAAVFI AQLNNVDLNA GQIFTILVTA TASSVGAAGV 420
  421 PAGGVLTIAI ILEAIGLPTN DLSLILAVDW IVDRTTTVVN VEGDALGAGI LNHLNQRTVK 480
  481 KGEQELQEVK VEAIPNSKSE EETSPLVTHQ NRAGPVAVAP ELESKESVL