YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13242306, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERATLFLSV LIAQGEGSRR RATQAHSTTQ PALLRLSDHL LANYKKGVRP VRDWRKPTLV  60
   61 SIDVIMYAIL NVDEKNQVLT TYIWYRQFWT DEFLQWTPED FDNVTKLSIP TDSIWVPDIL 120
  121 INEFVDVGKS PSIPYVYVHH QGEVQNYKPL QLVTACSLDI YNFPFDVQNC SLTFTSWLHT 180
  181 IQDINISLWR TPEEVRSDKS IFINQGEWEL LGVFTKFQEF SIETSNSYAE MKFYVVIRRR 240
  241 PLFYAVSLLL PSIFLMVVDI VGFCLPPDSG ERVSFKITLL LGYSVFLIIV SDTLPATAIG 300
  301 TPLIGVYFVV CMALLVISLA ETIFIVQLVH KQDLQRPVPD WLRHLVLDRI AWLLCLGEQP 360
  361 MAHRPPATFQ ANKTDDCSAM GNHCSHVGSP QDLEKTSRSR DSPLPPPREA SLAVRGLLQE 420
  421 LSSIRHSLEK RDEMREVARD WLRVGYVLDR LLFRIYLLAV LAYSITLVTL WSIWHYS

Type	Start	End	Confidence
Signal Peptide	1	17	0.92
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	242	0.99
Transmembrane Helix	243	265	0.93
Cytoplasmic	266	274	0.87
Transmembrane Helix	275	296	0.88
Non-Cytoplasmic	297	303	0.72
Transmembrane Helix	304	326	0.92
Cytoplasmic	327	451	0.98
Transmembrane Helix	452	474	0.93
Non-Cytoplasmic	475	477	0.86