YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPY5R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFKLEEHFN KTFVTENNTA AARNAAFPAW EDYRGSVDDL QYFLIGLYTF VSLLGFMGNL  60
   61 LILMAVMKKR NQKTTVNFLI GNLAFSDILV VLFCSPFTLT SVLLDQWMFG KAMCHIMPFL 120
  121 QCVSVLVSTL ILISIAIVRY HMIKHPISNN LTANHGYFLI ATVWTLGFAI CSPLPVFHSL 180
  181 VELKETFGSA LLSSKYLCVE SWPSDSYRIA FTISLLLVQY ILPLVCLTVS HTSVCRSISC 240
  241 GLSHKENRLE ENEMINLTLQ PSKKSRNQAK TPSTQKWSYS FIRKHRRRYS KKTACVLPAP 300
  301 AGPSQGKHLA VPENPASVRS QLSPSSKVIP GVPICFEVKP EESSDAHEMR VKRSITRIKK 360
  361 RSRSVFYRLT ILILVFAVSW MPLHVFHVVT DFNDNLISNR HFKLVYCICH LLGMMSCCLN 420
  421 PILYGFLNNG IKADLRALIH CLHMS

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.96
Transmembrane Helix	44	66	0.91
Cytoplasmic	67	77	0.87
Transmembrane Helix	78	100	0.89
Non-Cytoplasmic	101	116	0.82
Transmembrane Helix	117	138	0.92
Cytoplasmic	139	155	0.82
Transmembrane Helix	156	177	0.90
Non-Cytoplasmic	178	208	0.94
Transmembrane Helix	209	229	0.89
Cytoplasmic	230	364	0.98
Transmembrane Helix	365	386	0.93
Non-Cytoplasmic	387	403	0.92
Transmembrane Helix	404	427	0.88
Cytoplasmic	428	445	0.94