YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RHAG_RAT
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.71
Transmembrane Helix	7	24	0.81
Non-Cytoplasmic	25	74	0.83
Transmembrane Helix	75	93	0.91
Cytoplasmic	94	100	0.66
Transmembrane Helix	101	123	0.83
Non-Cytoplasmic	124	135	0.73
Transmembrane Helix	136	155	0.75
Cytoplasmic	156	161	0.52
Transmembrane Helix	162	180	0.65
Non-Cytoplasmic	181	192	0.73
Transmembrane Helix	193	215	0.87
Cytoplasmic	216	224	0.85
Transmembrane Helix	225	244	0.91
Non-Cytoplasmic	245	260	0.74
Transmembrane Helix	261	282	0.88
Cytoplasmic	283	290	0.77
Transmembrane Helix	291	308	0.77
Non-Cytoplasmic	309	313	0.66
Transmembrane Helix	314	335	0.90
Cytoplasmic	336	350	0.78
Transmembrane Helix	351	373	0.87
Non-Cytoplasmic	374	383	0.66
Transmembrane Helix	384	405	0.91
Cytoplasmic	406	450	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFKFSLIAL SLEVVMIVSF ALFVEYETSQ NGSQKSASQQ NASQQNAAAQ QNASQQGNAS  60
   61 SPAKEDQFFQ LYPLFQHVHV MIFVGFGFLM TFLKKYGFSG VGFNLFLAAL GLQWGTIVQG 120
  121 LLHSHGLKFP FRIKNMINAD FSTATVLISF GAVLGKTSPI QMIIMTILEI AVFAGNEHLV 180
  181 TEIFKASDTG ASMTIHAFGA YFGLAVAGVL YRSGLKHGHP NEESVYHSDL FAMIGTLFLW 240
  241 MFWPSFNSAI AQPENNQYRA IVNTYMSLAA CVITAYALSS LVERRGRLDM VHIQNATLAG 300
  301 GVAVGTCADM EIPLYFAMTI GSIAGIISVL GYKFLSPLLA HKLMIHDTCG VHNLHGLPGV 360
  361 FGGLASIVAI SWGKSTVSTM AMQATALGSS IGSAIVGGLV TGLILKLPVW NQPPDEYCFD 420
  421 DSVSWKVPKY RELDNYFFQH VTHNHVEHEV