YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109512053, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWPTKKDLK TAMEVFALFQ WALSALVIVI TVIMVNLYLV VFTSFWPVTV LMLLWLAFDW  60
   61 KTPERGGRRF NCVRRWCLWK HYSNYFPLKI VKTKDIPTNH NYILACHPHG LLSHSWFGHF 120
  121 STDTTGFSKI FPGITPYMLT LGAFFWVPFL REYIMSTGAC SVSQSSIDFL LTQKGTGNML 180
  181 VVVVGGLAEC KYSMPGSTTL FLKKRQGFVR TALRYGVSLI PAYAFGEADL YDQHIFTPGS 240
  241 FISHFQKWFQ KMVHVYPCAF YGRGFTKNSW GLLPYSQPVT TIVGEPLPLP KIENPSQEIV 300
  301 AKYHTLYIDA LRKLFDQHKT KFGISETQEL VII

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	35	0.91
Non-Cytoplasmic	36	38	0.62
Transmembrane Helix	39	60	0.80
Cytoplasmic	61	126	0.75
Transmembrane Helix	127	149	0.75
Non-Cytoplasmic	150	175	0.45
Transmembrane Helix	176	190	0.22
Cytoplasmic	191	333	0.54