YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56605704, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.83
Transmembrane Helix	8	29	0.87
Cytoplasmic	30	39	0.80
Transmembrane Helix	40	61	0.90
Non-Cytoplasmic	62	99	0.95
Transmembrane Helix	100	119	0.91
Cytoplasmic	120	132	0.88
Transmembrane Helix	133	153	0.94
Non-Cytoplasmic	154	159	0.83
Transmembrane Helix	160	182	0.89
Cytoplasmic	183	200	0.91
Transmembrane Helix	201	226	0.89
Non-Cytoplasmic	227	238	0.88
Transmembrane Helix	239	258	0.94
Cytoplasmic	259	267	0.85
Transmembrane Helix	268	287	0.63
Non-Cytoplasmic	288	403	0.52
Transmembrane Helix	404	426	0.84
Cytoplasmic	427	441	0.55
Transmembrane Helix	442	466	0.81
Non-Cytoplasmic	467	472	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVLGVFSL ASWVPCLCSG ASCLLCSCCP MSKNSTVTRL IYASILILGT IVSCIMMTEG  60
   61 IQTQLKKIPG FCEGEFQIKI VDTKAEKDCD VLVGFKAVYR INFAVAIFFF AFFLLMLKVK 120
  121 TSKDPRAAVH NGFWFFKIAA IIGIMVGSFY IPGGHFTKVW FSAGMLGATF FIFIQLVLLV 180
  181 DLAHSWNELW VNRMEEGNPR LWYAALLSFT SLFYILSIVF AALLYIFYTK PDGCTENKVF 240
  241 ISLNLIFCVA VSIVSILPKV QEHQPRSGLL QSSIITLYTL YLTWSAMTNE PDRSCNPSLM 300
  301 SIITQLTSPT VSPANSTTPA PAYVPPSQNG HFINLDDLGG LTIFVICLIY SSIRTSSNSQ 360
  361 VNKLTLSGSD SVILGDTTNG ASDEEDGRPR RAVDNEKDGV QYNYSFFHLM LCCASLYIMM 420
  421 TITSWYSPDA KFQKVSSERL AVWVKMGSSW VCLLLYLWTL VAPLVLTGRD FS