YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FKBP8_RAT
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWAEPSEP AAQLLCGAPL LEGFEVLDGV DDAEEEDDLS GLPPLEDMGQ PTVEEAEQPG  60
   61 ALAREFLAAT EPEPAPAPAP EEWLDILGNG LLRKKTLVPG PTGSSRPLKG QVVTVHLQMS 120
  121 LENGTRVQEE PELAFTLGDC DVIQALDLSV PLMHVGETAM VTADSKYCYG PQGSRSPYIP 180
  181 PHAALCLEVT LKTAEDGPDL EMLSGQERVA LANRKRECGN AHYQRADFVL AANSYDLAIK 240
  241 AITSNAKVDM TCEEEEELLQ LKVKCLNNLA ASQLKLDHYR AALRSCSQVL EHQPDNIKAL 300
  301 FRKGKVLAQQ GEYSEAIPIL RAALKLEPSN KTIHAELSKL VKKRAAQRST ETALYRKMLG 360
  361 NPSRLPAKCP GKGAWSIPWK WLFGATAVAL GGVALSVVIA ARN

Type	Start	End	Confidence
Cytoplasmic	1	378	0.57
Transmembrane Helix	379	401	0.85
Non-Cytoplasmic	402	403	0.58