YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34874171, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPGVGPA SLRFAAAASW LVVRRRQVEH FPRVVQFLES LRAAVPGLVC YRHHERLCMG  60
   61 LKAKVVVELI VQERPWTQIL NALNLHFPES RTTEQDRKLL EAQENFCLLV KQLSEDPASS 120
  121 PQELEQDYGE PFLVAMEKLL FEYLCQLERV LPTVRAQELQ DVLSWIQPGC SVTSSVALRQ 180
  181 YGMDMGWPFP ESPSGSVSPP QQTKPASHSP LPKAKLGPLQ PASQEHPEHL AGNRFNLAPL 240
  241 GKRKCPSQWT SAKACHKERP TVMLFPFRNT GLPSQDIPNP KSKEEHEPEP VCTEKSKTPS 300
  301 QTLGKRALEE TPPDSPATKQ KENCVNCMDP LGYSSPPSRV KKPVLSPSLC SSVITIGDLV 360
  361 LDSDEEENNQ KEGKESLKNY QKTKLDTYIP MFCDYIP

Type	Start	End	Confidence
Signal Peptide	1	17	0.51
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	397	0.98