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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LETM1_RAT
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASILLRSCR GRGPARLASP RAASPRGSLR DRACLSCTRT VGLTSHESVL SRCCTPANPV  60
   61 YLYFKSEPLS CWTQRPECQG TVARAAWTPA SARLVVTGPQ YLPVRGWHSS SPLGEDSMIE 120
  121 KSLKSLKDKN KKLEEGGPVY SPPAQVVVKK SLGQKILDEL KHYYHGFRLL WIDTKIAARM 180
  181 LWRILNGHTL TRRERRQFLR ICADLFRLVP FLVFVVVPFM EFLLPVVVKL FPNMLPSTFE 240
  241 TQSIKEERLK KELRVKLELA KFLQDTIEEM ALKNKAAKGN ATKDFSAFFQ KIRETGERPS 300
  301 NEEIMRFSKL FEDELTLDNL TRPQLVALCK LLELQSIGTN NFLRFQLTMR LRSIKADDKL 360
  361 ISEEGVDSLT VKELQAACRA RGMRALGVTE DRLKGQLKQW LDLHLYHEIP TSLLILSRAM 420
  421 YLPDTLSPAD QLKSTLQTLP EIVAKEAQVK AAEVEGEQVD NKAKLEATLQ EEAAIQQEHL 480
  481 EELKRAAETA KDIQPEVAEA TVPGRPGAEL QPKMVDVIPP SEILKDTAPV LEGLKGEEIT 540
  541 KEEIDILSDA CSKLKEQKKS LTKEKEELEL LKEDVQDYSE DLQEIKKELS KTGDEKYIEE 600
  601 STASKRLSKR VQQMIGQIDG LITQLETTQQ NGKLDPAAAS SPTGESVISV DELISAMKQI 660
  661 KHIPEHKLIS LTSALDENKD GNINIDDLVK VIDLVNKEDV QISTTQVAEI VATLEKEEKV 720
  721 EEKEKAKEKA EKEAAEVKN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle