YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLPL2_RAT
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.11
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPRETKWNI SFAGCGFLGV YHIGVASCLR EHAPFLVANA THIYGASAGA LTATALVTGA  60
   61 CLGEAGANII EVSKEARKRF LGPLHPSFNL VKTIRGCLLK TLPADCHTRA SGRLGISLTR 120
  121 VSDGENVIIS HFSSKDELIQ ANVCSTFIPV YCGLIPPTLQ GVRYVDGGIS DNLPLYELKN 180
  181 TITVSPFSGE SDICPQDSST NIHELRITNT SIQFNLRNLY RLSKALFPPE PMVLREMCKQ 240
  241 GYRDGLRFLR RNGLLNQPNP LLALPPVVPQ EEDAEEAAVT EERTGGEDRI LEHLPARLNE 300
  301 ALLEACVEPK DLMTTLSNML PVRLATAMMV PYTLPLESAV SFTIRLLEWL PDVPEDIRWM 360
  361 KEQTGSICQY LVMRAKRKLG DHLPSRLSEQ VELRRAQSLP SVPLSCATYS EALPNWVRNN 420
  421 LSLGDALAKW EECQRQLLLG LFCTNVAFPP DALRMRAPAS PTATDPATPQ DPSGLPPC

Type	Start	End	Confidence
Cytoplasmic	1	7	0.76
Transmembrane Helix	8	26	0.78
Non-Cytoplasmic	27	47	0.74
Transmembrane Helix	48	70	0.56
Cytoplasmic	71	321	0.56
Transmembrane Helix	322	336	0.11
Non-Cytoplasmic	337	478	0.56