YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157820073, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLAVLYYLL WSFQTSAGHF PRDCASSKNL MAKECCPPWM GDGSPCGHLS GRGSCQDILL  60
   61 SNAPSGPQFP FKGVDDRESW PSVFYNRTCQ CSGNFMGFNC GNCKFGFGGP NCTEKRLLIR 120
  121 RNIFDLSASE KNKFFSYLTL AKHTISSVYV IPTGTYGQMN NGSTPMFKDI NIYDLFVWMH 180
  181 YYVSRDTLLG GSEIWRDIDF AHEAPGFLPW HRLFLLLWEQ EMQELTGDEN FTIPYWDWRD 240
  241 AENCDICTDE YLGGRHPENP NLLSPASFFS SWEIICSRSE EYNSHQVLCD GTPEGPLLRN 300
  301 PGNHDKAKTP RLPSSADVEF CLSLTQYESG SMDRTANFSF RNTLEGFASP LTGIADSSQS 360
  361 SMHNALHIYM NGTMSQVQGS ANDPIFLLHH AFVDSIFEQW LRRHRPLLEV YPEANAPIGH 420
  421 NRESYMVPFI PLYRNGDFFI SSKDLGYDYS YLQESDPGFY RNYIEPYLEQ ASRIWPWLLG 480
  481 AALVGAVVAT ALAGLSSRLC HQKKKQPQEE RQPLLMDKDD YHSLLYQSHL

Type	Start	End	Confidence
Signal Peptide	1	17	0.81
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	473	0.99
Transmembrane Helix	474	496	0.91
Cytoplasmic	497	530	0.96