YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77736548, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAMSAAKI WRPSRGLRQA ALLLLGRPGA RGLARFHPSR QQQQQFPSLD DKPQFPGASA  60
   61 EFVDKLEFIQ PNVISGIPIY RVMDRQGQII NPSEDPHLPQ EEVLKLYRSM TLLNTMDRIL 120
  121 YESQRQGRIS FYMTNYGEEG THVGSAAALE RTDLVFGQYR EAGVLMYRDY PLELFMAQCY 180
  181 GNVSDPGKGR QMPVHYGCKE RHFVTISSPL ATQIPQAVGA AYAAKRANAN QIVICYFGEG 240
  241 AASEGDAHAG FNFAATLECP IIFFCRNNGY AISTPTSEQY RGDGIAARGP GYGIMSIRVD 300
  301 GNDVFAVYNA TKEARRRAVA ENQPFLIEAM TYRIGHHSTS DDSSAYRSVD EVNYWDKQDH 360
  361 PISRLRQYLL NQGWWDEEQE KAWRKQSRKK VMEAFEQAER KLKPNPSLLF SDVYQEMPAQ 420
  421 LRRQQESLAR HLQTYGEHYP LDHFDK

Type	Start	End	Confidence
Signal Peptide	1	32	0.96
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	446	0.99