YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT8B3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.75
Transmembrane Helix	69	86	0.55
Non-Cytoplasmic	87	90	0.52
Transmembrane Helix	91	110	0.74
Cytoplasmic	111	292	0.92
Transmembrane Helix	293	316	0.89
Non-Cytoplasmic	317	338	0.91
Transmembrane Helix	339	364	0.85
Cytoplasmic	365	916	0.94
Transmembrane Helix	917	935	0.93
Non-Cytoplasmic	936	946	0.72
Transmembrane Helix	947	967	0.90
Cytoplasmic	968	993	0.85
Transmembrane Helix	994	1015	0.83
Non-Cytoplasmic	1016	1030	0.76
Transmembrane Helix	1031	1052	0.84
Cytoplasmic	1053	1056	0.68
Transmembrane Helix	1057	1079	0.86
Non-Cytoplasmic	1080	1100	0.85
Transmembrane Helix	1101	1125	0.82
Cytoplasmic	1126	1335	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGVHLGENL EDKDTEFTWE VKANDRTYHK QFKKKGFLCW RQKKYKSNAI HTAKYNIFSF  60
   61 LPLNLYEQFH RMSNLYFLFI IILQGIPEIS TLPWFTLFAP LVCLFVIRAT RDLVDDIGRH 120
  121 RSDKIINNRP CQILRGKSFL WKKWKNLCVG DVVCLSKDSI VPADLLLLAS TEPSSLCYVE 180
  181 TADIDGETNL KFRQALTVTH HELTSPKKMA SFQGTVTCEE PNSRMHHFVG SLEWNSRKYP 240
  241 LDIGNLLLRG CKIRNTDTCY GLVIYAGLDT KIMKNCGKIH LKRTKLDLMM NKLVALIFLS 300
  301 LVIASLLLTV GFTFMVKQFK AKHYYMSPTH GRSDAMESFF IFWGFLILLS VMVPMAMFII 360
  361 AEFIYLGNSI FINWDLNMYY EPLDMPAKAR STSLNDQLGQ VQYIFSDKTG TLTQNIMTFK 420
  421 KCCINGCIYD SDDEHGTLRK RNPYAWNPFA DGKLQFYNKE LESLVQGRQD RAVQEFWRLL 480
  481 AICHTVMVQE KDNQLLYQAA SPDEEALVTA ARNFGYVFLS RTQDTITLVE LGEERVYQVL 540
  541 AMMDFNSVRK RMSVLVRNPE GSICLYTKGA DTVILERLRS KGVMEATTEE VLAAFAEQTL 600
  601 RTLCLAYKDV EEDAYKEWEP EHQEAALLLQ NRAQALHQVY NKMEQNLQLL GATAIEDKLQ 660
  661 DGVPETIKCL KKGNIKIWVL TGDKPETAVN IGFACQLLSE NMIILEDKDI NQVLERYWED 720
  721 NVHQKAFKMM THHNMALVIN GEFLDQLLLS LRKEPRALVQ NAVVDEVAQE PVVSALDFLQ 780
  781 KRRISQMWRN AGPSLGTSHS ADSKIRESPE VQRERAFVDL ASKCQAVICC RVTPKQKALV 840
  841 VALVKKYQQV VTLAIGDGAN DVNMIKTADI GVGLAGQEGM QAVQNSDYVL AQFCYLQRLL 900
  901 LVHGRWSYMR VCKFLRYFFY KTVASMMAQI WFSLVNGFSA QPLYEGWFLA LFNLLYSTLP 960
  961 VLYIGLFEQD VTAEKSLKMP ELYMAGQKGE LFNYSIFMQA ITHGTITSMI NFFVTVMVSS1020
 1021 DMSKAGSSHD YQSLGVLVAI SSLLSVTLEV MLVVKYWTLL FVGAVVLSLS SYVLMTSLTQ1080
 1081 SLWMYRISPK TFPFLFADYN VLFEPCSLLL IVLNVALNVL PMLALRTIHR TVLKQRPKGE1140
 1141 EEAPSEEVAV EPAMRHLRRG IPARRSSYAF SHREGYANLI TQGTILRRQT HVDDSDGGTV1200
 1201 CESLNPPEED IPLQNKDSVF NPRKISILAK KRRHFFGKGS QEEVHPNTSS QTMEKQPTIH1260
 1261 RDSETQKLPT TTSATSGKLL PSASEDEAFY SVASQYTLAS QPKHTDVHSS FWKSPLWRDS1320
 1321 ASSSPSQLEV PRKQS