YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TRAT1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSSGCPFF LWGLLAFLGL ALVISLIFNI SHYVEKQRRD EIYRYSDDYI PRVDEYYVED  60
   61 APIYGNLENI IPEPLDENCY EQMKGRPQRS ASDPQEVAAP AQVPAEAQMC YASLDHSVKG 120
  121 KRRRPRKQNT NVSDRGKDTQ VYTMDANVSQ INMVESFPPD NQVVEESIHD DPARLFGLIR 180
  181 AKREPVI

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.56
Transmembrane Helix	9	30	0.83
Cytoplasmic	31	187	0.59