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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20071092, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEARRDSTS SLQRKKPPWL KLDIPAVVPP AAEEPSFLQP VRRQAFLRSV SMPAETARVP  60
   61 SPHHEPRRLV LQRQTSITQT IRRGTADWFG VSKDSDSTQK WQRKSIRHCS QRYGKLKPQV 120
  121 IRELDLPSQD NVSLTSTETP PPLYVGPCQL GMQKIIDPLA RGRAFRMADD TADGLSAPHT 180
  181 PVTPGAASLC SFSSSRSGFN RLPRRRKRES VAKMSFRAAA ALVKGRSIRD GTLRRGQRRS 240
  241 FTPASFLEED MVDFPDELDT SFFAREGVLH EEMSTYPDEV FESPSEAALK DWEKAPDQAD 300
  301 LTGGALDRSE LERSHLMLPL ERGWRKQKEG GPLAPQPKVR LRQEVVSAAG PRRGQRIAVP 360
  361 VRKLFAREKR PYGLGMVGRL TNRTYRKRID SYVKRQIEDM DDHRPFFTYW LTFVHSLVTI 420
  421 LAVCIYGIAP VGFSQHETVD SVLRKRGVYE NVKYVQQENF WIGPSSEALI HLGAKFSPCM 480
  481 RQDPQVHSFI LAAREREKHS ACCVRNDRSG CVQTSKEECS STLAVWVKWP VHPSAPDLAG 540
  541 NKRQFGSVCH QDPRVCDEPS SEDPHEWPED ITKWPICTKS SAGNHTNHPH MDCVITGRPC 600
  601 CIGTKGRCEI TSREYCDFMR GYFHEEATLC SQVHCMDDVC GLLPFLNPEV PDQFYRLWLS 660
  661 LFLHAGILHC LVSICFQMTV LRDLEKLAGW HRIAIIYLLS GITGNLASAI FLPYRAEVGP 720
  721 AGSQFGILAC LFVELFQSWQ ILARPWRAFF KLLAVVLFLF AFGLLPWIDN FAHISGFVSG 780
  781 LFLSFAFLPY ISFGKFDLYR KRCQIIIFQV VFLGLLAGLV VLFYFYPVRC EWCEFLTCIP 840
  841 FTDKFCEKYE LDAQLH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle