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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45445606, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPDNDIYAF YDIRGYKGKC RPGRPNSERI LQPRMSLLGK PLNYNRGTRR DVRYRRLQSR  60
   61 LYNFLERPRG LHAIFYHVMV FLMVFTCLAL SVFSTIKEYE EDAVYILFRM EILVVIWFTM 120
  121 EFGARLWSSG CRSRYQGCLG RLKFVKRPFC IIDIVTILAS IVVLGMGTSG QVFATSALRG 180
  181 LRFFQILRMV RMDRRGGTWK LLGSVVYAHR QELITTMYIG FLGLIFASFL VYMWEKDVND 240
  241 KFSNFAQALW WGITLCTVGY GDMVPITWQG KLIASCCALL GISFFALPAG ILGSGFALKV 300
  301 QQQQRQKHMI RRRQPAATLI QAVWRCYAAD EHSVSVATWN IHRVALPSPP ASRASSSFKH 360
  361 NTSFVARLPT IRRHKSQTIQ TPGGGDGGGV SKPPGSSRAS TRYTRTIRDI NASVENLEVV 420
  421 QNGKSMNPSF SEDSVAETTC LKNIKNSDAS QPATLANCKL SSSAGSLAQF PDRNRDRDQD 480
  481 RRGHGEGEGD QAEEQAKAGG SRRNLTIPVV LYGFLHGNFL GSTLSLRNPR VAPANDRDLE 540
  541 AGRDEDEVHK DTCQRSNTLP LPVKPDSPSG SPGSGRTGRF FAAASHFLET GFSSPNPIID 600
  601 VANEEDEPRC TQLTNRHKTA IRFIRKLKYF VARRKFKEAL KPYDVKDVME QYAAGHVDLL 660
  661 GRVKMLHLRL DQILGKQGSK AKDVYASKIS LASRVVKVER QVADIEEKLD ILIKAYMEDR 720
  721 DRFLALPLPA KPKIHSISPS HKPLHHAHNL AMIDVWKRTA ALSVHPEQVT TTPLLNPSAP 780
  781 DSSELRSLTA TQTPTTTTDA IATQTPMPPH VQHTATNTKS SVLNSYQLGS EKQQHNDVFM 840
  841 TELENRTKKR VTLSLHRSTS EPYSKQEQRI TIPDEGADSL DSSAKPTPPD SSIILIDEYE 900
  901 DFEEEDLNCE GEMDHFPTWE IDSDIGVEVD VDADADGDCD ESTEDTALLQ CATRTAIVIT 960
  961 PISPVSSAHN LQQLNDQTTT LNKSNLLPPD SG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle