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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45445605, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPDNDIYAF YDIRGYKGKC RPGRPNSERI LQPRMSLLGK PLNYNRGTRR DVRYRRLQSR  60
   61 LYNFLERPRG LHAIFYHVMV FLMVFTCLAL SVFSTIKEYE EDAVYILFRM EILVVIWFTM 120
  121 EFGARLWSSG CRSRYQGCLG RLKFVKRPFC IIDIVTILAS IVVLGMGTSG QVFATSALRG 180
  181 LRFFQILRMV RMDRRGGTWK LLGSVVYAHR QELITTMYIG FLGLIFASFL VYMWEKDVND 240
  241 KFSNFAQALW WGITLCTVGY GDMVPITWQG KLIASCCALL GISFFALPAG ILGSGFALKV 300
  301 QQQQRQKHMI RRRQPAATLI QAVWRCYAAD EHSVSVATWN IHRVALPSPP ASRASSSFKH 360
  361 NTSFVARLPT IRRHKSQTIQ TPGGGDGGGV SKPPGSSRAS TRYTRTIRDI NASVENLDEE 420
  421 DEPRCTQLTN RHKTAIRFIR KLKYFVARRK FKEALKPYDV KDVMEQYAAG HVDLLGRVKM 480
  481 LHLRLDQILG KQGSKAKDVY ASKISLASRV VKVERQVADI EEKLDILIKA YMEDRDRFLA 540
  541 LPLPAKPKIH SISPSHKPLH HAHNLAMIDV WKRTAALSVH PEQVTTTPLL NPSAPDSSEL 600
  601 RSLTATQTPT TTTDAIATQT PMPPHVQHTA TNTKSSVLNS YQLGSEKQQH NDVFMTELEN 660
  661 RTKKRVTLSL HRSTSEPYSK QEQRITIPDE GADSLDSSAK PTPPDSSIIL IDEYEDFEEE 720
  721 DLNCEGEMDH FPTWEIDSDI GVEVDVDADA DGDCDESTED TALLQCATRT AIVITPISPV 780
  781 SSAHNLQQLN DQTTTLNKSN LLPPDSG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle