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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Dg-PC
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFQWFLSAS ASLSLFLLLD FVVWIHGERD FNVNDSQVPV IEPKDVPAYK QDPYVTELMS  60
   61 CQNTPSEIVL SLLLKKHDWS ELTATKRAHV QAKLAKFFAI PKEFISLDSV SKRELRSMHK 120
  121 LAMRKGGKGN KNIETLNRRL GRASFMIGCG PSYFVMGEPI AKQIAHQMKD GTIGALTEEN 180
  181 FGLWFIWRKE LKSRSNRKRR QSEGSGADED DYDYGDDDEE VAEPSTEVPP VTTHAHRHHH 240
  241 GALEVSEKIV SPESVSSSAV PLVPDVEEEI EESVSKLESV ISKTIENTKN IKELPVLGEA 300
  301 DDGEDEEEVE LQQLGVPLAA EIVPDETTSA AATRATEMVK PVDLDEQEIS VDSGAVPAID 360
  361 VEASATPTPS MSARETQKPF SPYDATSSVS SSFSPVASIA SGSEAGEDST SVSTPHLSPA 420
  421 NSPTVMPTEL DRNGLATTSS SSSSSASPPP SSSVPTQATQ PTTSASSFSS SSSTTTTSTT 480
  481 ATVSTTTTAS STATTTTTTT TLSESPKEGG EPDAISSGNN SLANNELSTP ATPTSSVATT 540
  541 TASTPESSSI SSNFVSTDYM EPQPEENSPP IIKTRLQKLA VTSGKAFTFH VLPETFYDAE 600
  601 DQGNLRLALT DKDGHELKAN SWLQFNADKR ELYGLPLDDT VSRWQYRLSA TDSGNASVTE 660
  661 TVEISVQQHR AVRTINHEIS VFVRINEKPG HNIDWQLKLI NAVARTLDDS TNSAVVVREI 720
  721 RQTPHDPHSA TFVYFNETLP TSECPEKELK DIIARLDANR LSDLVQPQLG IKSITGQLIG 780
  781 SCQKDLTQVK PTQHMTKNVP PMPRNQVDRV NASLGQLLVY KVPADTFYDA NDNQLTLTLK 840
  841 TRDHLELSPR HWLQFDSKNE EFYGIPKSGD IGSEEYLLVA EDSGGLSAHD ALVVVVSPAP 900
  901 KRDFGFFFKA YLSIKHERFN ADLQRKFVER VAKLNGDPTT GQIQIRSITT HHDSDGTIVN 960
  961 FYNTTLYRKH NSCREKEVAM TRSVYLNSDL SLREAAKRAL GPELNLTNFS VVPFSICHHT1020
 1021 ENIDTNQLDY IPSRPEEPTH KSSFGEDYMI TFVWPIVIIV AMLVAASIIA CCLHWCRQRS1080
 1081 GKMELGDEEE RKSFRAKGIP VIFQDEYEEK PEIGNKSPVI LKDEKPPLLP PSYNTSNMNG1140
 1141 DNDVDDYVPP PSVVVGGREV RGKSPATPSY RKPPPYVSP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle