YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6790-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.78
Transmembrane Helix	7	26	0.93
Cytoplasmic	27	46	0.75
Transmembrane Helix	47	63	0.96
Non-Cytoplasmic	64	310	0.85
Transmembrane Helix	311	329	0.41
Cytoplasmic	330	423	0.57
Transmembrane Helix	424	443	0.93
Non-Cytoplasmic	444	460	0.56
Transmembrane Helix	461	483	0.86
Cytoplasmic	484	487	0.47
Transmembrane Helix	488	509	0.89
Non-Cytoplasmic	510	524	0.58
Transmembrane Helix	525	553	0.78
Cytoplasmic	554	564	0.55
Transmembrane Helix	565	582	0.95
Non-Cytoplasmic	583	590	0.51
Transmembrane Helix	591	612	0.78
Cytoplasmic	613	619	0.67
Transmembrane Helix	620	637	0.97
Non-Cytoplasmic	638	645	0.59
Transmembrane Helix	646	666	0.82
Cytoplasmic	667	733	0.86
Transmembrane Helix	734	756	0.86
Non-Cytoplasmic	757	777	0.87
Transmembrane Helix	778	800	0.90
Cytoplasmic	801	810	0.77
Transmembrane Helix	811	832	0.90
Non-Cytoplasmic	833	845	0.81
Transmembrane Helix	846	867	0.93
Cytoplasmic	868	897	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLALLQTFL WCFFSVVVNV SFVLYRRLTY RLVGKVQVLM ELWKSKVVLV HLLLLICIMR  60
   61 IFYQSGPLSQ LEPQKTLLDM GVPPAADRLV VFLLEGLRAD TLFSDNCSGA VYIRDIILRQ 120
  121 GLVGISKTSV PTLTRSAEVA LFAGFNPMPS ILPTSNFDTI FNRTLAFDKG AFLRFSHLSD 180
  181 LRRRLTKRAC LEKLWYANKL VMLVNLAEVG GASPLDIGFQ MKLHNTQRNI RDAYELIEAT 240
  241 FNDSKTAYLY TSAHGLTYFG SHGGGSDEER EAPFLLWGAG VKHVTENITS DFVLNNGVGM 300
  301 QLHKLDQIQL APLMSALIGL PPPVNNLAIL PQGYMKVSRE YARKSVHLNA LQLLTQAKAI 360
  361 IRLHERGVFH KWLPKDKDLD LQQIAYYQNQ MDHLLDMGWR SKALETSTLA IKVALKSLKF 420
  421 YHNYYHIPLV VTTVLALLGW QFYQLVKLSQ NVMAPHYMRR GYLTWCTIFL ASLGLLLGEM 480
  481 VFLQWAPFMT VICLVVPFGV WCMTLAALPQ NGGWIFEPLK HLRWIVGPAA VMIASIYCNC 540
  541 PLSLAYILCV GFYNRRGWLH PSPKFLAWLA LVLLLGGFLW SQKGMQILMT TNYRVVLQAI 600
  601 SMLVVIVRPC VLNENHKWKV WVINGGILFV AAIGIFLKEM GKPVPLYLFA ANWAYLIYAF 660
  661 ASVPCSSRTT PQSRLELIRF NLLTLHVLLS DSYVSLFAQG LIIEYQMGLE VHEKFKEADE 720
  721 DVKILTSSKH LQMCYRFAVS ILLYFYASLF GTGHWVGGFT YLANSARLFL PDSSSGLVPL 780
  781 LVLIHLLIPS IVIMASVVAL SSFGRQQIRT IFSSLMLICN AVVLFFVVFV PHNAYWPMAH 840
  841 PSVVHALLAQ LTVILILACE SIVTIFFRRL NMNRCSDWRQ EADEFESSYP PITTTAV