YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mdy-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	176	0.90
Transmembrane Helix	177	202	0.78
Non-Cytoplasmic	203	232	0.85
Transmembrane Helix	233	253	0.85
Cytoplasmic	254	264	0.80
Transmembrane Helix	265	286	0.92
Non-Cytoplasmic	287	292	0.76
Transmembrane Helix	293	313	0.94
Cytoplasmic	314	401	0.96
Transmembrane Helix	402	421	0.92
Non-Cytoplasmic	422	446	0.89
Transmembrane Helix	447	470	0.74
Cytoplasmic	471	516	0.82
Transmembrane Helix	517	539	0.68
Non-Cytoplasmic	540	544	0.73
Transmembrane Helix	545	564	0.83
Cytoplasmic	565	576	0.81
Transmembrane Helix	577	597	0.92
Non-Cytoplasmic	598	615	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVHIFDQWL YNLDPGIASQ TKKKKTKKKT FPKCGGVVSI KQKKPNKTIT MTTNKDPQDK  60
   61 EPGKAEQPTK NSGSSGVGIM KRLRRSASAT EHNLSSLRNR KSTQNLFDQH GNPIDLRQYR 120
  121 KVLDKDENGN GTNGSEKKLR YRRTQSVTRA EEISNKEEKQ RRAQPGRPIH RPRDSLFSWS 180
  181 SGFTNFSGLV NWGFLLLCIG GLRLGLENLL KYGIRINPLD WFFFISGHNE GEGHNALILS 240
  241 IYSLVHISLC LAVEKGLAME IIAEGLGLFI QIVNIVVLVC LPVVTIHLKG HAFSLMGAST 300
  301 VCFFYSVLFL KLWSYVQTNM WCRQTYYQKN PRERRPSITL AELKKGVLNG GEEDEDVSKL 360
  361 VQYPDNLTYK DLLYFLCAPT LCYELNFPRT SRVRKRFLLK RLLEVVIGVN VVMALFQQWI 420
  421 IPSVRNSLIP FSNMDVALAT ERLLKLALPN HLCWLCFFYL MFHSFLNAVG ELLNFADRNF 480
  481 YCDWWNANNI DTFWRTWNMP VHRWCVRHLY IPVVQMGYSS RQASTIVFLF SAVFHEYLVS 540
  541 VPLQIYKIWA FMGMMGQIPL SAISKSIEKK LGPRMGNIIV WASIILGQPL CIMAYYHDYV 600
  601 VQHFKNSLNG TDYSS