YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRP-PI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.82
Transmembrane Helix	39	59	0.83
Cytoplasmic	60	76	0.84
Transmembrane Helix	77	96	0.92
Non-Cytoplasmic	97	110	0.84
Transmembrane Helix	111	130	0.89
Cytoplasmic	131	137	0.69
Transmembrane Helix	138	155	0.88
Non-Cytoplasmic	156	187	0.93
Transmembrane Helix	188	208	0.93
Cytoplasmic	209	323	0.98
Transmembrane Helix	324	343	0.90
Non-Cytoplasmic	344	372	0.90
Transmembrane Helix	373	395	0.91
Cytoplasmic	396	445	0.98
Transmembrane Helix	446	468	0.88
Non-Cytoplasmic	469	474	0.83
Transmembrane Helix	475	496	0.91
Cytoplasmic	497	557	0.96
Transmembrane Helix	558	580	0.86
Non-Cytoplasmic	581	594	0.80
Transmembrane Helix	595	616	0.74
Cytoplasmic	617	985	0.98
Transmembrane Helix	986	1006	0.93
Non-Cytoplasmic	1007	1035	0.92
Transmembrane Helix	1036	1058	0.89
Cytoplasmic	1059	1069	0.79
Transmembrane Helix	1070	1089	0.72
Non-Cytoplasmic	1090	1113	0.77
Transmembrane Helix	1114	1145	0.88
Cytoplasmic	1146	1221	0.90
Transmembrane Helix	1222	1239	0.89
Non-Cytoplasmic	1240	1549	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDTSSPMD RFCGSTFWNA TETWYTNDPD FTPCFEQTAL VWTPCAFYWA FVIFDFYYLK  60
   61 ASLDRNIPWN KLNVSKALVN LGLLVITALD LIMALVKKGG DSELPLYDLD VWGPIIKFAT 120
  121 FLLLFIFIPL NRKYGVQTTG CQFIFWFLLT VLSIPRCRTE VRLDAERQKI LNSQQPSEQD 180
  181 FSWEEYQFVS FFIFFTFTSI MLILNCFADG MPRQTKYQRG ENEIPELSAS FLSRITYQWF 240
  241 DKMALKGYRN PLEEKDLWDL RPQDSCSEVM PIFAHHWNQN VRKNYKNKAR VEPKAQFSNG 300
  301 NVTFENPHGE KNGRKKGMAS IMPPIYKSFG GVFLFGALMK LFTDTLTFAQ PQVLSLIISF 360
  361 VEAQDAEPEW KGILYAVLLF VLAAAQTFIL GQYFHRMFIV GLRIRTALIN AIYRKALRIS 420
  421 NSTKKESTVG EIVNLMAVDA QRFMELTTYL NMIWSAPLQI GLALYFLWQQ LGPSVLAGLA 480
  481 VMIILIPVNG VIASRIKTYQ IRQMKYKDER VKLMNEVLSG IKVLKLYAWE PSFEKQVLDI 540
  541 RDKEIATLRS TAYLNAGTSF LWSCAPFLVS LVTFATYVLI DENNVLDATK TFVSLSLFNI 600
  601 LRFPLTMLPM LITNLVQTQV SVNRINKFLN SEELDPNSVL HDSSKPHPMS IENGEFSWGD 660
  661 EITLRNINIE VKKGSLVALV GTVGSGKSSV VQAFLGEMEK LAGVVNTVGK LAYVPQQAWI 720
  721 QNATVRDNIL FGQTYDRKRY NKVIDACALR ADIDILSAGD LTEIGEKGIN LSGGQKQRIS 780
  781 LARAVYSDAD LYLLDDPLSA VDAHVGKHIF EEVIGPKGIL ARKSRVLVTH GVTFLPQVDS 840
  841 IYVIKMGEIS ESGTFDQLVK NKGAFADFII QHLQEGNEEE EELNQIKRQI SSTADVPELL 900
  901 GTVEKAIKLA RTESLSDSIS VTSADSLMGG GGSLRRRTKR QDSHDSVASA ASLKKKQEVE 960
  961 GKLIETEKSQ TGGVEFAVYK HYIKSVGIFL SVATLVLNFV FQAFQIGSNL WLTQWANDQN1020
 1021 VANDTGLRDM YLGVYGAFGF GQGVLAYFAV VIVYLGGFQA AKTIHNELLA VIIRGSVCRF1080
 1081 FDITPIGRLL NSFSGDMDVV DEELPATMDS FMTFIFMVLA TIVVISLSTP IFLAVIVPIA1140
 1141 FLYYFAQRFY VATSRQLMRL ESVSRSPIYS HFSETVTGAS TIRAYNVGDR FIEESDAKVD1200
 1201 KNQVCKYPSV IANRWLAIRL EMVGNLIILF ASLFAVLGGQ TNPGLVGLSV SYALQVTQTL1260
 1261 NWLVRMSSDI ETNIVSVERI KEYGETKQEA PWELEQDKNK PKNWPQEGRV EFQNFQVRYR1320
 1321 EGLDLVLRGV SFNIQGGEKV GIVGRTGAGK SSLTLALFRI IEAAGGRISI DGVDIASMGL1380
 1381 HMLRSRLTII PQDPVLFSGS LRINLDPFEI KTDDEIWKAL ELSHLKSFVK SLAAGLNHEI1440
 1441 AEGGENLSVG QRQLVCLARA LLRKTKVLVL DEATAAVDLE TDDLIQKTIR TEFKECTVLT1500
 1501 IAHRLNTILD SDKVIVLDKG QIIEFASPTE LLDNPKSAFY SMAKDANLV