YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRP-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.82
Transmembrane Helix	39	59	0.83
Cytoplasmic	60	76	0.84
Transmembrane Helix	77	96	0.92
Non-Cytoplasmic	97	110	0.84
Transmembrane Helix	111	130	0.89
Cytoplasmic	131	137	0.69
Transmembrane Helix	138	155	0.88
Non-Cytoplasmic	156	187	0.93
Transmembrane Helix	188	208	0.93
Cytoplasmic	209	323	0.98
Transmembrane Helix	324	343	0.90
Non-Cytoplasmic	344	372	0.90
Transmembrane Helix	373	395	0.91
Cytoplasmic	396	445	0.98
Transmembrane Helix	446	468	0.88
Non-Cytoplasmic	469	474	0.83
Transmembrane Helix	475	496	0.91
Cytoplasmic	497	557	0.94
Transmembrane Helix	558	579	0.75
Non-Cytoplasmic	580	594	0.65
Transmembrane Helix	595	611	0.41
Cytoplasmic	612	985	0.70
Transmembrane Helix	986	1006	0.81
Non-Cytoplasmic	1007	1042	0.81
Transmembrane Helix	1043	1065	0.68
Cytoplasmic	1066	1100	0.71
Transmembrane Helix	1101	1124	0.68
Non-Cytoplasmic	1125	1128	0.51
Transmembrane Helix	1129	1150	0.82
Cytoplasmic	1151	1220	0.90
Transmembrane Helix	1221	1238	0.89
Non-Cytoplasmic	1239	1548	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDTSSPMD RFCGSTFWNA TETWYTNDPD FTPCFEQTAL VWTPCAFYWA FVIFDFYYLK  60
   61 ASLDRNIPWN KLNVSKALVN LGLLVITALD LIMALVKKGG DSELPLYDLD VWGPIIKFAT 120
  121 FLLLFIFIPL NRKYGVQTTG CQFIFWFLLT VLSIPRCRTE VRLDAERQKI LNSQQPSEQD 180
  181 FSWEEYQFVS FFIFFTFTSI MLILNCFADG MPRQTKYQRG ENEIPELSAS FLSRITYQWF 240
  241 DKMALKGYRN PLEEKDLWDL RPQDSCSEVM PIFAHHWNQN VRKNYKNKAR VEPKAQFSNG 300
  301 NVTFENPHGE KNGRKKGMAS IMPPIYKSFG GVFLFGALMK LFTDTLTFAQ PQVLSLIISF 360
  361 VEAQDAEPEW KGILYAVLLF VLAAAQTFIL GQYFHRMFIV GLRIRTALIN AIYRKALRIS 420
  421 NSTKKESTVG EIVNLMAVDA QRFMELTTYL NMIWSAPLQI GLALYFLWQQ LGPSVLAGLA 480
  481 VMIILIPVNG VIASRIKTYQ IRQMKYKDER VKLMNEVLSG IKVLKLYAWE PSFEKQVLDI 540
  541 RDKEIATLRS TAYLNAGTSF LWSCAPFLVS LVTFATYVLT SEANQLSVEK VLVSIALFDL 600
  601 MKLPLTILPM LSVDIAETQV SVNRINKFLN SEELDPNSVL HDSSKPHPMS IENGEFSWGD 660
  661 EITLRNINIE VKKGSLVALV GTVGSGKSSV VQAFLGEMEK LAGVVNTVGK LAYVPQQAWI 720
  721 QNATVRDNIL FGQTYDRKRY NKVIDACALR ADIDILSAGD LTEIGEKGIN LSGGQKQRIS 780
  781 LARAVYSDAD LYLLDDPLSA VDAHVGKHIF EEVIGPKGIL ARKSRVLVTH GVTFLPQVDS 840
  841 IYVIKMGEIS ESGTFDQLVK NKGAFADFII QHLQEGNEEE EELNQIKRQI SSTADVPELL 900
  901 GTVEKAIKLA RTESLSDSIS VTSADSLMGG GGSLRRRTKR QDSHDSVASA ASLKKKQEVE 960
  961 GKLIETEKSQ TGGVEFAVYK HYIKSVGIFL SVATLVLNFV FQAFQIGSNL WLTQWANDQN1020
 1021 VANDTGLRDM YLGVYGAFGF GQVLSKYLSG LALAIGGLHC SMNVFNKLLN TGLKWPMELF1080
 1081 DTTPLGRILS RYSKDVDTVD SVLPAITVQL LNTCFGVLAT IVVISLSTPI FLAVIVPIAF1140
 1141 LYYFAQRFYV ATSRQLMRLE SVSRSPIYSH FSETVTGAST IRAYNVGDRF IEESDAKVDK1200
 1201 NQVCKYPSVI ANRWLAIRLE MVGNLIILFA SLFAVLGGQT NPGLVGLSVS YALQVTQTLN1260
 1261 WLVRMSSDIE TNIVSVERIK EYGETKQEAP WELEQDKNKP KNWPQEGRVE FQNFQVRYRE1320
 1321 GLDLVLRGVS FNIQGGEKVG IVGRTGAGKS SLTLALFRII EAAGGRISID GVDIASMGLH1380
 1381 MLRSRLTIIP QDPVLFSGSL RINLDPFEIK TDDEIWKALE LSHLKSFVKS LAAGLNHEIA1440
 1441 EGGENLSVGQ RQLVCLARAL LRKTKVLVLD EATAAVDLET DDLIQKTIRT EFKECTVLTI1500
 1501 AHRLNTILDS DKVIVLDKGQ IIEFASPTEL LDNPKSAFYS MAKDANLV