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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Pvr-PF
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.22
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWFTPSRDE NRIFASQSRT DPKTRNSTHQ TGRSTLTVLN AQPSDTGLYK CVTTDNSNQN  60
   61 VQRATYRIKV LKQNESYLNV GEPSGHYNVQ EYANRTIQMT ANFEGFPTPS FSWFKPDGTE 120
  121 VRQSENNFKI LSTELSTMLQ VLNAQLQDSG TYVLRGSNSF GVVQREYNVS VMDAPALKMS 180
  181 DAYVQVGSVA RLECTVRSYP PAIVTFFFRP CSLEPQWPTC SVLNQNFSLP SEQEKYQFQT 240
  241 RPRPGKLSVE RIYEVSFLPT EPGILTCIAQ NIIDGKERRT LTKAHVLLGN ISENMTIYGF 300
  301 DKDHKIAKED NVNFTCEALA YHFDGNLKWF INGEDLKESD SVHIETSHTK YSYKSTVHIT 360
  361 TISDRDRGTY ECRAYHNDKD AVYSSREIDL YVHDPSAPQW TNGGQEGHSK IKRKLSQTLE 420
  421 LECASTAVPV AIVRWFKDDK EVTESKLRHI IEKESKLLIT HLYPGDEGVY KCVVENRLDR 480
  481 IERSFTVVIS DLPGISMAWV WFGVILFLIL IGLCVFLAVR YQKEHKRHLA LKAAGLANFE 540
  541 EGAVGHINPD LTLDEQAELL PYNREFEFPR ENLKLGKQLG AGAFGVVLKG EAKGIRREEP 600
  601 TTTVAVKMVK ATADNEVVRA LVSELKIMVH LGQHLNVVNL LGAVTKNIAK RELMVIVEYC 660
  661 RFGNIQNFLL RNRKCFINQI NPDTDHIDPS IMTQRMSDNY ELHRDTNGGG LKYANVGFPI 720
  721 HSYINEPHNN NTQPPTHRRN SDNDPRSGTR AGRTGSGTAT YSYDRQMDTC ATVMTTVPED 780
  781 DQIMSNNSVQ PAWRSNYKTD STEAMTVTTV DLISWAFQVA RGMDYLSSKK VLHGDLAARN 840
  841 ILLCEDNVVK ICDFGLARSM YRGDNYKKSE NGKLPIKWLA LESLSDHVFS TYSDVWSYGI 900
  901 VLWEMFSLAK VPYPGIDPNQ ELFNKLNDGY RMEKPKFANQ ELYEIMLECW RKNPESRPLF 960
  961 AELEKRFANM LGEDVASHYL DLNNPYMQSN IEYMKKQSTD YLALMGSPDE LAPAAPRYVN1020
 1021 GHIVPDIRIE ELPDDYMEMS RDSDPDACTA IFSPTRLEGE SSDFPDFSSE TTFNFPGARQ1080
 1081 SPTLSNNLNS GSSKPLRKKN GMPTVDVADQ APEEIPMLHR SSTGSDGSPE QGRRFNQALK1140
 1141 QQYVTPTPSP RHHVETKLNG EPSENYVNMK PPRKNIPGKT TTGGGGAAAG ASTEAFSNPS1200
 1201 YQPLSTVNEK EQRRY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle