YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG32447-PB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.95
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	184	0.99
Transmembrane Helix	185	209	0.90
Cytoplasmic	210	220	0.91
Transmembrane Helix	221	243	0.91
Non-Cytoplasmic	244	254	0.73
Transmembrane Helix	255	275	0.88
Cytoplasmic	276	287	0.66
Transmembrane Helix	288	309	0.87
Non-Cytoplasmic	310	377	0.73
Transmembrane Helix	378	397	0.92
Cytoplasmic	398	409	0.76
Transmembrane Helix	410	434	0.88
Non-Cytoplasmic	435	439	0.87
Transmembrane Helix	440	460	0.93
Cytoplasmic	461	658	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRRHLLLI LLLIMQLIAT TPASRSLSVN GNNIWRRVRL VTSQESDRNA YQVLKPSSRN  60
   61 ATSTTTTTST TTSTTSSTTS TTTPAAPQTQ RSAKQLDLNF PGGNVSSAAR LEMSTEFFVV 120
  121 PTLSASSSSS TTSTTTPATP RRSSGAKARA AGTTGRVTPG SSSNSTPPSI VSTHLPFAGL 180
  181 RKEPWVVPVL VLATLTMLMM AAFEIFVLFK AWRTSPSRRH LFLGQMLLLG LFACASLGAI 240
  241 ITAQPSLISC GAIRFGVGVA YALVFAALLV KCVFLISLNG GVYLPAPYQG LLLLFALLIQ 300
  301 VAIGGQWLLT QPPEVYTTSV PVMGSGFLST TVASQTNYSA LFYPTSYTTL DGTPEIYTRI 360
  361 AAVSTVLIPL CKTQFSELLF SLIYIVFLIV FIAVLAIKSR GIRDNYREAT YIGLAIGGAI 420
  421 PIWLGWMLCG LAVAERHKDA CVAFGLVATS ATVFLVMFMP KGRQLAAMGK EGLYVEDREE 480
  481 QFSSLSRAGS GYSPSFFHFK PIKYGVMSGC GLPNSASNTG QGLSSKHCSS ANNGGDRVAL 540
  541 VTAAPPSYTR MYHYFPAHLS PHPFCYYPPA PPPPLPPQPP PPQQAAPPTL TPLTLKQLGN 600
  601 SLSSMTQAAQ LAKTLRYAPG MFIRPDETNL YTTLEPTLSS NPNVYFQRSG AVHPGILY