YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8177-PJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	630	0.99
Transmembrane Helix	631	653	0.90
Cytoplasmic	654	664	0.83
Transmembrane Helix	665	686	0.85
Non-Cytoplasmic	687	715	0.81
Transmembrane Helix	716	737	0.89
Cytoplasmic	738	746	0.76
Transmembrane Helix	747	767	0.85
Non-Cytoplasmic	768	830	0.91
Transmembrane Helix	831	852	0.92
Cytoplasmic	853	865	0.93
Transmembrane Helix	866	887	0.88
Non-Cytoplasmic	888	918	0.91
Transmembrane Helix	919	938	0.96
Cytoplasmic	939	958	0.93
Transmembrane Helix	959	979	0.88
Non-Cytoplasmic	980	984	0.63
Transmembrane Helix	985	1004	0.68
Cytoplasmic	1005	1018	0.78
Transmembrane Helix	1019	1038	0.86
Non-Cytoplasmic	1039	1043	0.60
Transmembrane Helix	1044	1065	0.86
Cytoplasmic	1066	1088	0.86
Transmembrane Helix	1089	1108	0.89
Non-Cytoplasmic	1109	1113	0.72
Transmembrane Helix	1114	1132	0.59
Cytoplasmic	1133	1166	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSSASGRE NNVRKLSFLG FNTKKKDNSQ LPIGSRKKNS IRTNDLNIEE DSEYESQTEP  60
   61 LNNAQNYDDI PEDFPLVSER AGHGDHSDNS VDEKHVQFGG KKKIPPSLSY DEQPTDQSHE 120
  121 RKRRRSRHQY YRQRKFSHQD SVEPKNKLEE NGDAGARRIS VQPEDTALEE ADLNELRSHR 180
  181 SDDPRALRRH KIHHSSIKLR ELPQITISPF TNKKPEVDHS PHEIFVQLDE LTGVGEDREW 240
  241 KETARWIKYE EDVEEGSDRW GKPHVASLSF HSLLNLRRCL ETGVVLLDLN EKDLPAVAYR 300
  301 VVEQMVIEDL IDINDKPSVM RSLLLRHRHV NEHQGVLPFT KRKYNSYTSL QNLSGTDDKK 360
  361 IKIMPAAEIG GSKRSNELKI DMKDDMYSSS QEDLKKLQND TILKRIPAGA EATTVLVGAV 420
  421 EFLEQPTIAF VRLSEGVLMP TLTEVPVPVR FMFVLLGPRN FDLDYHEVGR SISTLMANEH 480
  481 FHSIAYKADD RKDLLSAINE FLDDSIVLPP GNWDRHDLLP FEELKAKKDW IRTRKIKALQ 540
  541 VKRDSEMIKI GKDEEKALLE KQTLGAIGFT IGGGDGGGDG DSDDDNGRKK KKPSPLEKTG 600
  601 RLWGGLRNDL KRRMPMYKSD ILDGLNTETL AATIFMYFAC LSTAITFGGL VSAKTNSWIG 660
  661 ISETLISCSL VGIVFHCLSC QPLVIIGTTG PLLLFDEALM VFCTQHEFDF LSLRVYVGVW 720
  721 LIIIALTVSA FEGSVYVRLL TRFTQEIFSA LITLIYIVET FMKLISIYRE NPLLSDYNLP 780
  781 PPTLVAHEHA TNESLLNATA SVTTNITQMV MNISTTAMPI GPPPLPKNQP NTALFCTILT 840
  841 LATFVVAYYL KLFRNSHFLG RNARRALGDF GVPISIAIFV LVDYLVPAVY TEKLVVPEGL 900
  901 SPSDPSKRGW YIGFDTSSTW IPFACVIPAL LVYILIFMES QISELIVDKP DRGLKKGSGL 960
  961 HWDIVLLCLL NCACGIFGMP WHCAATVRSV THVSSVTIMS RTHAPGESPR IVDVKEQRLS1020
 1021 GFFVCLMIGL SVLMAPLLRL IPMAVLFGVF LYMGVASMSG VQLFERIRLY FMPVKHYPPT1080
 1081 SYVKRLRPWK LHLFTTIQVL CLVLLWSVKS SQFSLAFPFF LIMMVPIRQN LTKLYKPEEM1140
 1141 QALDGSEMKK NDDDEPDFYE QTNIPA