YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11262-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	58	0.54
Transmembrane Helix	59	79	0.69
Cytoplasmic	80	206	0.81
Transmembrane Helix	207	228	0.83
Non-Cytoplasmic	229	234	0.76
Transmembrane Helix	235	254	0.87
Cytoplasmic	255	263	0.78
Transmembrane Helix	264	289	0.78
Non-Cytoplasmic	290	306	0.84
Transmembrane Helix	307	330	0.85
Cytoplasmic	331	340	0.71
Transmembrane Helix	341	360	0.84
Non-Cytoplasmic	361	389	0.89
Transmembrane Helix	390	411	0.92
Cytoplasmic	412	482	0.99
Transmembrane Helix	483	502	0.94
Non-Cytoplasmic	503	509	0.69
Transmembrane Helix	510	527	0.96
Cytoplasmic	528	538	0.76
Transmembrane Helix	539	557	0.85
Non-Cytoplasmic	558	584	0.84
Transmembrane Helix	585	611	0.82
Cytoplasmic	612	629	0.78
Transmembrane Helix	630	655	0.78
Non-Cytoplasmic	656	670	0.77
Transmembrane Helix	671	693	0.88
Cytoplasmic	694	702	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLSDIFRV ADLCQIDGVR QAWPSSHQSS IPRRLRMPEQ PEPNYLDEPE TISVGRFIFK  60
   61 IIRIGALLLI WAFFTYILVR NATTPDLTSV VTVLPNETVL RRLSVPHDAT QITLKGPIDL 120
  121 QLQKHESVIM ETPHVGVRVE WRDSELKTKF WSSDMWIVYL AEQSQAFTKT SKTVQISEVS 180
  181 NAQAVISLES RSEEPVALLM VVSVYPLVTE NGVLYAALLL IGFYILIVFE LTDRTFAALM 240
  241 MATTGIAILT ALGNRPTLET IISWIDFETL ILLLGMMILV AIMSETGVFD WMAVLAYRIS 300
  301 KGNPWPMLLL LSSITAIMSC MLDNVTMLLL MAPIAIRLCE AMAVQTPLVL IVVVMYSNIG 360
  361 GTLTPVGDPP NVIIATNSEV ISAGVDFLDF TIHMLPGVLL AAVAGYAVMY VTMRKSLFKL 420
  421 EEQQLELAAE RENSRRRSSA DITARAEEMR IRQPTGRQLL KPAENYFQTL AHLEAHHRIR 480
  481 DKTLLIKCLF TLCFVIIFFL LHSLPFMHGA TLGWVAILAA FLLLILAKMN DIEAILDQVE 540
  541 WSALLFLAAL FVLTEAVDKL GFIRWLCDLT VKVIMSVEER YQTTVAILII IWMSAILAAF 600
  601 VGNVPVTTML LRLNIELHRN DAISVPLTPL IWALSYGACF GGNGTLIGAS ANVVAAAIAQ 660
  661 QYGYKISFVQ FFIYGFPMML TSIFLATVYL LIAHSLFAWH KT