YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45445863, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	204	0.98
Transmembrane Helix	205	227	0.89
Non-Cytoplasmic	228	287	0.94
Transmembrane Helix	288	310	0.83
Cytoplasmic	311	333	0.84
Transmembrane Helix	334	357	0.77
Non-Cytoplasmic	358	390	0.67
Transmembrane Helix	391	415	0.84
Cytoplasmic	416	425	0.67
Transmembrane Helix	426	445	0.70
Non-Cytoplasmic	446	463	0.90
Transmembrane Helix	464	486	0.89
Cytoplasmic	487	503	0.78
Transmembrane Helix	504	525	0.87
Non-Cytoplasmic	526	572	0.96
Transmembrane Helix	573	596	0.82
Cytoplasmic	597	602	0.74
Transmembrane Helix	603	621	0.94
Non-Cytoplasmic	622	632	0.71
Transmembrane Helix	633	652	0.90
Cytoplasmic	653	859	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKFPLKGSR EAAAEGNSYI TAYQTVMKKS NGHTNGAGGD GDLDGTFRDH PLAQHTKLTT  60
   61 SLTAAGTDDE DMIDITPRSS PGDVIGGGGG GGSSSGYHRE TATESDTERD FGHSGGNGGG 120
  121 NHHNQRTMHQ HVPTHSAFGD PMDGALSFYG SSDVQDDIPG IGQYEDFHTI DWQRDIARDR 180
  181 MRHRYIVKKR QDSLWDLIKG SIDAGSGWLC VLLVGIAAGC VAGMVDIGAS WMSDLKHGIC 240
  241 PPAFWFNREQ CCYPAKQSVF EEGNCSTWKT WPEIFGLDRN GTGPYIVAYI WYVLWALLFA 300
  301 SLSASLVRMF APYACGSGIP EIKTILSGFI IRGYLGKWTL LIKSVGLMLS VSAGLTLGKE 360
  361 GPMVHIASCI GNIFSHVFPK YGRNEAKKRE ILSAAAAAGV SVAFGAPIGG VLFSLEEVSY 420
  421 YFPLKTLWRS FFCALIAAFV LRSLTPFGNE HSVLFFVEYN KPWIFFELIP FVFLGIMGGV 480
  481 IGTFFIKANL WWCRYRKFSK LGQYPVMEVL FVTLVTAIIC YPNPFTRMNM NELIFLLVSK 540
  541 CSPGDVTNPL CDYKRMNITS GNSFIEVTEP GPGVYSSIWL LMLTFILKLA LTIFTFGMKV 600
  601 PAGLFIPSLL LGAIMGRIVG IGVEQFAYSY PNIWFFTVIM FELTGGVRYI VPLMAAAMAS 660
  661 KWVGDALGRQ GIYDAHIALN GYPFLDSKEE FAHTTLAADV MQPKRNETLN VITQDSMTVD 720
  721 DVENLLKETE HNGYPVVVSR ENQYLVGFVL RRDLNLAIGN AKRLIEGISS SSIVLFTSSQ 780
  781 PIQNLGPQPL KLKKILDMAP ITVTDQTPME TVVDMFRKLG LRQTLVTHNG RLLGVITKKD 840
  841 VLRHVKQMDN EDPNTVLFN