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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gogo-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.18
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKNSKEMAA NRRRKKTIGM LTSGLKSVVK WKIIVSSIML LLLSGTSHVL AVRKGRLMSP  60
   61 STFTALSGDL HVQIQFNGNE MSSQAEEEHT IGGGPSNEEP LSSSDGLKSR NNTIMSTLVI 120
  121 SKIIDEVESP LEKGLTPGPE VTNTSQVVLH RKRKEVVQNI PLFPDPRFNV TQVTVPCQTF 180
  181 LIGGRYEMQV VSNLKSVNRS EVTTTLVPAQ DERLHQTLDV RWPSAEMIVS PVRLKTYPKH 240
  241 PVEVTLRFPE VNCNQSGSLA LPEFWLELIY CGKDRSCNRN ITPTSVLFAE QIRGFPKNKS 300
  301 LHLGCELFGL AGNYAVQLRP MIPAQNVPTT RRLLSVDWSD EFVFNVYARS IFPCDPHTGI 360
  361 GVLYEYPGCI LEQGDRVRLY ARLRADVASL KPPTSLHYVS EQRVVKSQHS LYFACEHFSE 420
  421 KYVEYCFVYV SQAISGAVAD VRMDCVPTLP VSDSDTGGWG PWSEWTPCST NCLGGTRNRY 480
  481 RFCDSPPPRY GAKFCEGPSV ETQKCGKSIA DTWDCIYETS GTVITKENST EVSQEIGPGC 540
  541 RCGCIVHLGS SKPKRIIAGA TQSCPGRSFW LIQVDGEESI SLALSFLRLP CATQYIKVRD 600
  601 GPSLSSTLLV ELNGGGLILK GAGVPVVVDS TGGQLLVEFS AGDGPAGNAT QEASPACTGG 660
  661 FMANVQQRLA TRSSNSSITL VAATRLSGKT RSVVHKSMSR LRFTLVHLSA MIFASIIIII 720
  721 SSLLGAQYVV RYRKYHLAVA RRQDEGSRLH TPRASLSSLQ GPPSRAMSTT TLLSEVIYMV 780
  781 KMRPKHHLRH SILRESVDAE NLTKETEFKE SDSQGMLAKC AEIKELGSSA SMVTLRNERS 840
  841 SPARSLDTGS IIGSPSSAEA ELAAVHSRSE SKDSPSDEPI EPPSCKDSAR DSESIISSGM 900
  901 SSLCNSPPMN SKRLSKYSDR YDAVTLKLLS SRLDESLQDA SSLLSVTESF RLGRLRTRSV 960
  961 SSSLTNGCYS PAASVVSTAT IRTTSNPKES KEKQNRRKLL ARPGSEFSLG NQEELEMDYY1020
 1021 DYNVINAGSA PGSYLGMDPA YLIWIPPFEE VAEREEDDKT PEPEPDPERD ERQPLYEEIR1080
 1081 MPKYGHYLSP ASNTESSKST TADNTPSSEE RSPPDSGRPS KATSPCDGTE RGGRSMPKQP1140
 1141 TPFMSRKQRR QSKQQMQSSL SLSAGSLDHE QRRSSKVPIE IAAVHQKVET ELEPNDSMTG1200
 1201 SYVEKETAVE KSSGDLQEFL SLDDIQFADE SGSDYEAVNL KKVPKSELQL SQDDARSKIL1260
 1261 RRKEPKSKEV AV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle