YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Start1-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNMDPSDVR STAQLILANA RQGNSAYNMQ YDMSRAHSIN LITEDFLAGY MQDGRMSVVR  60
   61 RFFCLFVTFD LVFVSLLWLI CIVINGDNIF TAFHKQIVEY TIYKSLFDVV AVAICRFLVL 120
  121 IFFYAILYIN HWSIIALSTS GSCLFLISKV FVFDWLDSKQ QVFEVILIIT SFILAWGEAW 180
  181 FLDCRVIPQE RHAQHYFRTM TSNDRTPMEQ PAILIEQERP PQSVTDFYSL MDTARHSDEE 240
  241 DELDDEYTQM GLDCLRKAYE IIESSDWKVE KVNQKGDTIH STQRDKIGKI YKLTARIKYP 300
  301 AKALMEDLFY RIEDCPKWNP ALLESKIVRK INSYTDITYQ VSVGGGGGMV KSRDFVNLRS 360
  361 CRLFYNGQIC DDDETAQLSS DDGNSSLNRS CEGSVSTISD GDSNTPLLPS SVSSCKATFP 420
  421 TSSKGAAMPF DTLGNSLGAK SLGPIVNFDE EPPPLDQDEF EDAKDKVDGE ANNMTKPNVP 480
  481 SVGKTKDRVW VTSAVSVQYA AVPPSPKYTS RLTLQFSEGR TLSVGLRFVK SLENRIAALW 540
  541 SGCFA

Type	Start	End	Confidence
Cytoplasmic	1	61	0.72
Transmembrane Helix	62	84	0.89
Non-Cytoplasmic	85	118	0.48
Transmembrane Helix	119	153	0.76
Cytoplasmic	154	161	0.45
Transmembrane Helix	162	182	0.83
Non-Cytoplasmic	183	545	0.59