YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4797-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.99
Transmembrane Helix	59	83	0.90
Non-Cytoplasmic	84	103	0.88
Transmembrane Helix	104	123	0.90
Cytoplasmic	124	130	0.83
Transmembrane Helix	131	149	0.94
Non-Cytoplasmic	150	155	0.78
Transmembrane Helix	156	178	0.92
Cytoplasmic	179	187	0.84
Transmembrane Helix	188	208	0.90
Non-Cytoplasmic	209	216	0.69
Transmembrane Helix	217	240	0.80
Cytoplasmic	241	300	0.97
Transmembrane Helix	301	324	0.90
Non-Cytoplasmic	325	338	0.95
Transmembrane Helix	339	361	0.93
Cytoplasmic	362	366	0.90
Transmembrane Helix	367	387	0.94
Non-Cytoplasmic	388	397	0.87
Transmembrane Helix	398	423	0.81
Cytoplasmic	424	432	0.83
Transmembrane Helix	433	451	0.89
Non-Cytoplasmic	452	464	0.67
Transmembrane Helix	465	484	0.96
Cytoplasmic	485	533	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVERDDEYL KFVPHTMSYQ VVPGSEFQCK KASYSSRKLS TIDEQDDDAA NRRGMMHQIL  60
   61 ATCAVLLLSA GCGMPIGFSA ILLPQLMDNN STEIPIDVET GSWIASVHSL ATPFGSLLSG 120
  121 PLADYLGRRR TLILSVIPLL LGWSTLAIAK SIKVVIFARF LCGFATGILG GPGQVYIAET 180
  181 AEPNLRSLLI GAPYVAYSSG ILMVYSLGSM MYWRSVAWCA NVLPLLSMVS ISFIPETPAW 240
  241 LLRNGHEKRA LQALSFLRGS EISAQKELND MKQRLAKERV TTKTNENIFQ LCCQRVAIKP 300
  301 LVIVIVFSLL QMFSGTFIVI FYAVDMISEF GAEFDSKQAA IATAVVRVIC CMVFCVVLIF 360
  361 VRRRRIMIVS GIGSGLFCLV LSVYQYARFD QPKMSYDVFV GAGCLLGYII FNTALMVMPG 420
  421 IMIGELFPAR IRGRTAGGVF ASMNVALFIF AKKFPALQAM LKMRGVFLVF GVSSFLLTAF 480
  481 MCLFQPETKG RSLEHIEDYF NGDNWLWFRR DRGYKTVNLQ PLEPLKDTRG LEA