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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Nmdar2-PA, Nmdar...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNNEQFGHS TASAQYFLQL AGYLGIPVIS WNADNSGLER RASQSTLQLQ LAPSIEHQSA  60
   61 AMLSILERYK WHQFSVVTSQ IAGHDDFVQA VRERVAEMQE HFKFTILNSI VVTRTSDLME 120
  121 LVNSEARVML LYATQTEAIT ILRAAEEMKL TGENYVWVVS QSVIEKKDAH SQFPVGMLGV 180
  181 HFDTSSAALM NEISNAIKIY SYGVEAYLTD PANRDRRLTT QSLSCEDEGR GRWDNGEIFF 240
  241 KYLRNVSIEG DLNKPNIEFT ADGDLRSAEL KIMNLRPSAN NKNLVWEEIG VWKSWETQKL 300
  301 DIRDIAWPGN SHAPPQGVPE KFHLKITFLE EAPYINLSPA DPVSGKCLMD RGVLCRVAAD 360
  361 HEMAADIDVG QAHRNESFYQ CCSGFCIDLL EKFAEELGFT YELVRVEDGK WGTLENGKWN 420
  421 GLIADLVNRK TDMVLTSLMI NTEREAVVDF SEPFMETGIA IVVAKRTGII SPTAFLEPFD 480
  481 TASWMLVGIV AIQAATFMIF LFEWLSPSGY DMKLYLQNTN VTPYRFSLFR TYWLVWAVLF 540
  541 QAAVHVDSPR GFTSRFMTNV WALFAVVFLA IYTANLAAFM ITREEFHEFS GLNDSRLVHP 600
  601 FSHKPSFKFG TIPYSHTDST IHKYFNVMHN YMRQYNKTSV ADGVAAVLNG NLDSFIYDGT 660
  661 VLDYLVAQDE DCRLMTVGSW YAMTGYGLAF SRNSKYVQMF NKRLLEFRAN GDLERLRRYW 720
  721 MTGTCRPGKQ EHKSSDPLAL EQFLSAFLLL MAGILLAALL LLLEHVYFKY IRKRLAKKDG 780
  781 GHCCALISLS MGKSLTFRGA VFEATEILKK HRCNDPICDT HLWKVKHELD MSRLRVRQLE 840
  841 KVMDKHGIKA PQLRLASSSD LLNHHHLKER PPLLGNLSLA ASAQDLYRWS YKTEIAEMET 900
  901 VL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle