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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: svr-PD
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFFCLALII GCAVGEYSEV RVIQEEDNFL ESPHYLKNEE IGDLFSQLAK DYPDLAQTYT  60
   61 IGKSLEDRPI YALALSAPTG ESKNGDLLRP MVKLVANIQG DEAVGRQMVL YMAEYLATHY 120
  121 DGDPKVQALL NLTEIHFLPT CNPDGFAKAK EGNCESLPNY VGRGNAANID LNRDFPDRLE 180
  181 QSHVHQLRAQ SRQPETAALV NWIVSKPFVL SANFHGGAVV ASYPYDNSLA HNECCEESLT 240
  241 PDDRVFKQLA HTYSDNHPIM RKGNNCNDSF SGGITNGAHW YELSGGMQDF NYAFSNCFEL 300
  301 TIELSCCKYP AASTLPQEWQ RNKASLLQLL RQAHIGIKGL VTDASGFPIA DANVYVAGLE 360
  361 EKPMRTSKRG EYWRLLTPGL YSVHASAFGY QTSAPQQVRV TNDNQEALRL DFKLAPVETN 420
  421 FDGNFRKVKV ERSEPPQKLK KQFNGFLTPT KYEHHNFTAM ESYLRAISSS YPSLTRLYSI 480
  481 GKSVQGRDLW VLEIFATPGS HVPGVPEFKY VANMHGNEVV GKELLLILTK YMLERYGNDD 540
  541 RITKLVNGTR MHFLYSMNPD GYEISIEGDR TGGVGRANAH GIDLNRNFPD QYGTDRFNKV 600
  601 TEPEVAAVMN WTLSLPFVLS ANLHGGSLVA NYPFDDNEND FNDPFMRLRN SSINGRKPNP 660
  661 TEDNALFKHL AGIYSNAHPT MYLGQPCELF QNEFFPDGIT NGAQWYSVTG GMQDWNYVRA 720
  721 GCLELTIEMG CDKFPKAAEL SRYWEDHREP LLQFIEQVHC GIHGFVHSTI GTPIAGAVVR 780
  781 LDGANHSTYS QVFGDYWKLA LPGRHNLTVL GDNYAPLRME VEVPDVHPFE MRMDITLMPD 840
  841 DPQHWASAND FRIIENVVNT RYHTNPQVRA RLAELENQNG QIASFGYADS EFGTIFNYLK 900
  901 MTSDIGEPEE HKYKLLVVSS LYDTTAPLGR EILLNLIRHL VEGFKLQDTS VVELLKRSVI 960
  961 YFLPQTSKFQ NVFDMYNSNT SICDPVLGDE LAERILGPET DQAKDVFLQF LRSERFDLML1020
 1021 TFGAGNSDLN YPKGDSVLVK FAHRMQRTEF NYSPLQCPPS ATRQLHRETT ERLTNMMYRI1080
 1081 YNLPVYTLGI SCCRMPHQKK IASVWRKNID KIKNFLALVK TGVSGLVQND KGQPLREAYV1140
 1141 RLLEHDRIIN VTKNVARFQL MLPHGLYGLE VTAPNYESQM IKVDVEDGRV TELGIIRMHP1200
 1201 FTLIRGVVLE LPNNDNRATT SIAGVVLDES NHPVRNAKVS VVGQTQLRNF TGSMGQYRIS1260
 1261 AVPLGTITLK VEAPRHLEAT RQMHLIQGGL ATENVVFHLK VNEHVFGLPR FLFILCASVL1320
 1321 IIVGVIVCVL CAQFWFYRRH RGDKPYYNFS LLPQRGKEQF GLEDDDGGDD GETELFRSPI1380
 1381 KRELSQRAHL VNNQTNYSFI IQAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle