YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A3_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	49	0.95
Transmembrane Helix	50	68	0.92
Cytoplasmic	69	79	0.71
Transmembrane Helix	80	97	0.94
Non-Cytoplasmic	98	104	0.60
Transmembrane Helix	105	125	0.78
Cytoplasmic	126	136	0.55
Transmembrane Helix	137	158	0.84
Non-Cytoplasmic	159	171	0.72
Transmembrane Helix	172	195	0.87
Cytoplasmic	196	202	0.79
Transmembrane Helix	203	226	0.78
Non-Cytoplasmic	227	245	0.80
Transmembrane Helix	246	269	0.91
Cytoplasmic	270	276	0.72
Transmembrane Helix	277	294	0.74
Non-Cytoplasmic	295	298	0.61
Transmembrane Helix	299	318	0.76
Cytoplasmic	319	331	0.81
Transmembrane Helix	332	354	0.84
Non-Cytoplasmic	355	363	0.63
Transmembrane Helix	364	387	0.85
Cytoplasmic	388	430	0.82
Transmembrane Helix	431	451	0.91
Non-Cytoplasmic	452	829	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWHRALGPGW KLLLALALTS LQGARGAEEE PSSDGSFQVV TFKWHHVQDP YIIALWILVA  60
   61 SLAKIVFHLS HKVTSIVPES ALLIVLGLVL GGIVWAADHI ASFTLTPTLF FFYLLPPIVL 120
  121 DAGYFMPNRL FFGNLGTILL YAVIGTIWNA ATTGLSLYGV FLSGLMGELK IGLLDFLLFG 180
  181 SLIAAVDPVA VLAVFEEVHV NEVLFIIVFG ESLLNDAVTV VLYNVFESFV TLGGDAVTGV 240
  241 DCVKGIVSFF VVSLGGTLVG VIFAFLLSLV TRFTKHVRII EPGFVFVISY LSYLTSEMLS 300
  301 LSSILAITFC GICCQKYVKA NISEQSATTV RYTMKMLASG AETIIFMFLG ISAVNPDIWT 360
  361 WNTAFVLLTL VFISVYRAIG VVLQTWILNR YRMVQLETID QVVMSYGGLR GAVAYALVVL 420
  421 LDEKKVKEKN LFVSTTLIVV FFTVIFQGLT IKPLVQWLKV KRSEHREPKL NEKLHGRAFD 480
  481 HILSAIEDIS GQIGHNYLRD KWSNFDRKFL SKVLMRRSAQ KSRDRILNVF HELNLKDAIS 540
  541 YVAEGERRGS LAFIRSPSTD NMVNVDFNTP RPSTVEASVS YFLRENVSAV CLDMQSLEQR 600
  601 RRSIRDTEDM VTHHTLQQYL YKPRQEYKHL YSRHELTPNE DEKQDKEIFH RTMRKRLESF 660
  661 KSAKLGINQN KKAAKLYKRE RAQKRRNSSI PNGKLPMENL AHNYTIKEKD LELSEHEEAT 720
  721 NYEEISGGIE FLASVTQDVA SDSGAGIDNP VFSPDEDLDP SILSRVPPWL SPGETVVPSQ 780
  781 RARVQIPNSP SNFRRLTPFR LSNKSVDSFL QADGHEEQLQ PAAPESTHM