YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28478878, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.96
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	107	0.85
Transmembrane Helix	108	129	0.90
Cytoplasmic	130	140	0.56
Transmembrane Helix	141	160	0.74
Non-Cytoplasmic	161	169	0.75
Transmembrane Helix	170	193	0.90
Cytoplasmic	194	204	0.68
Transmembrane Helix	205	227	0.83
Non-Cytoplasmic	228	235	0.75
Transmembrane Helix	236	258	0.67
Cytoplasmic	259	275	0.58
Transmembrane Helix	276	299	0.90
Non-Cytoplasmic	300	319	0.61
Transmembrane Helix	320	344	0.76
Cytoplasmic	345	361	0.65
Transmembrane Helix	362	384	0.82
Non-Cytoplasmic	385	391	0.54
Transmembrane Helix	392	414	0.87
Cytoplasmic	415	430	0.54
Transmembrane Helix	431	454	0.88
Non-Cytoplasmic	455	459	0.57
Transmembrane Helix	460	484	0.87
Cytoplasmic	485	814	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPRGTAHSV RAPLSWLLLL LLSLQVAVPA GALAETLLDA PRARGASSNP PSPASVVAPG  60
   61 TTPFEESRLP VFTLDYPHVQ IPFEITLWIL LASLAKIGFH LYHKLPTIVP ESCLLIMVGL 120
  121 LLGGIIFGVD EKSPPAMKTD VFFLYLLPPI VLDAGYFMPT RPFFENFGTI FWYAVVGTLW 180
  181 NSIGIGVSLF GICQIEAFGL SDITLLQNLL FGSLISAVDP VAVLAVFENI HVNEQLYILV 240
  241 FGESLLNDAV TVVLYNLFKS FCQMKTIQTV DVFAGIANFF VVGIGGVLIG ILLGFIAAFT 300
  301 TRFTHNIRVI EPLFVFLYSY LSYITAEMFH LSGIMAITAC AMTMNKYVEE NVSQKSYTTI 360
  361 KYFMKMLSSV SETLIFIFMG VSTVGKNHEW NWAFVCFTLA FCLIWRALGV FVLTQVINWF 420
  421 RTIPLTFKDQ FIIAYGGLRG AICFALVFLL PATVFPRKKL FITAAIVVIF FTVFILGITI 480
  481 RPLVEFLDVK RSNKKQQAVS EEIHCRFFDH VKTGIEDVCG HWGHNFWRDK FKKFDDKYLR 540
  541 KLLIRENQPK SSIVSLYKKL EIKHAIEMAE TGMISTVPSF ASLNDCREEK IRKLTPGEMD 600
  601 EIREILSRNL YQIRQRTLSY NRHNLTADTS ERQAKEILIR RRHSLRESLR KDNSSNRERR 660
  661 ASTSTSRYLS LPKNTKLPEK LQKKKKVSNA DGNSSDSDPD VGTTVLNLQP RTRRFLPDQF 720
  721 SKKASQAYKM EWKNEVDVGS VRVPPSVSPA PRSKDGGTQT PGLLRQPLLS KDQRFGRGRE 780
  781 DSLTEDVPPK PPPRLVRRAS EPGNRKGRLG NEKP