YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLC9A10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.76
Transmembrane Helix	15	32	0.82
Non-Cytoplasmic	33	40	0.66
Transmembrane Helix	41	61	0.88
Cytoplasmic	62	77	0.78
Transmembrane Helix	78	95	0.90
Non-Cytoplasmic	96	103	0.73
Transmembrane Helix	104	127	0.89
Cytoplasmic	128	138	0.81
Transmembrane Helix	139	158	0.94
Non-Cytoplasmic	159	167	0.79
Transmembrane Helix	168	190	0.86
Cytoplasmic	191	207	0.88
Transmembrane Helix	208	230	0.89
Non-Cytoplasmic	231	252	0.84
Transmembrane Helix	253	277	0.92
Cytoplasmic	278	296	0.87
Transmembrane Helix	297	319	0.89
Non-Cytoplasmic	320	330	0.82
Transmembrane Helix	331	352	0.88
Cytoplasmic	353	362	0.78
Transmembrane Helix	363	385	0.76
Non-Cytoplasmic	386	399	0.78
Transmembrane Helix	400	419	0.93
Cytoplasmic	420	615	0.95
Transmembrane Helix	616	636	0.80
Non-Cytoplasmic	637	645	0.67
Transmembrane Helix	646	665	0.73
Cytoplasmic	666	673	0.76
Transmembrane Helix	674	693	0.92
Non-Cytoplasmic	694	1177	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIFKEFFF STEDLPEVIL TLSLISSIGA FLNRHLEDFP IPVPVILFLL GCSFEVLSFT  60
   61 SSQVQRYANA IQWMSPDLFF RIFTPVVFFT TAFDMDTYML QKLFWQILLI SIPGFLVNYI 120
  121 LVLWHLASVN QLLLKPTQWL LFSAILVSSD PMLTAAAIRD LGLSRSLISL INGESLMTSV 180
  181 ISLITFTSIM DFDQRLQSKR NHTLAEEIVG GICSYIIASF LFGILSSKLI QFWMSTVFGD 240
  241 DVNHISLIFS ILYLIFYICE LVGMSGIFTL AIVGLLLNST SFKAAIEETL LLEFWTFLSR 300
  301 IAFLMVFTFF GLLIPAHTYL YIEFVDIYYS LNIYLTLIVL RFLTLLLISP VLSRVGHEFS 360
  361 WRWIFIMVCS EMKGMPNINM ALLLAYSDLY FGSDKEKSQI LFHGVLVCLI TLVVNRFILP 420
  421 VAVTILGLRD ATSTKYKSVC CTFQHFQELT KSAASALKFD KDLANADWNM IEKAITLENP 480
  481 YMLNEEETTE HQKVKCPHCN KEIDEIFNTE AMELANRRLL SAQIASYQRQ YRNEILSQSA 540
  541 VQVLVGAAES FGEKKGKCMS LDTIKNYSES QKTVTFARKL LLNWVYNTRK EKEGPSKYFF 600
  601 FRICHTIVFT EEFEHVGYLV ILMNIFPFII SWISQLNVIY HSELKHTNYC FLTLYILEAL 660
  661 LKIAAMRKDF FSHAWNIFEL AITLIGILHV ILIEIDTIKY IFNETEVIVF IKVVQFFRIL 720
  721 RIFKLIAPKL LQIIDKRMSH QKTFWYGILK GYVQGEADIM TIIDQITSSK QIKQMLLKQV 780
  781 IRNMEHAIKE LGYLEYDHPE IAVTVKTKEE INVMLNMATE ILKAFGLKGI ISKTEGAGIN 840
  841 KLIMAKKKEV LDSQSIIRPL TVEEVLYHIP WLDKNKDYIN FIQEKAKVVT FDCGNDIFEE 900
  901 GDEPKGIYII ISGMVKLEKS KPGLGIDQMV ESKEKDFPII DTDYMLSGEI IGEINCLTNE 960
  961 PMKYSATCKT VVETCFIPKT HLYDAFEQCS PLIKQKMWLK LGLAITARKI REHLSYEDWN1020
 1021 YNMQLKLSNI YVVDIPMSTK TDIYDENLIY VILIHGAVED CLLRKTYRAP FLIPITCHQI1080
 1081 QSIEDFTKVV IIQTPINMKT FRRNIRKFVP KHKSYLTPGL IGSVGTLEEG IQEERNVKED1140
 1141 GAHSAATARS PQPCSLLGTK FNCKESPRIN LRKVRKE