YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32264663
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.88
Transmembrane Helix	142	164	0.88
Non-Cytoplasmic	165	194	0.73
Transmembrane Helix	195	213	0.52
Cytoplasmic	214	224	0.52
Transmembrane Helix	225	245	0.92
Non-Cytoplasmic	246	318	0.59
Transmembrane Helix	319	340	0.90
Cytoplasmic	341	360	0.59
Transmembrane Helix	361	381	0.83
Non-Cytoplasmic	382	392	0.63
Transmembrane Helix	393	414	0.67
Cytoplasmic	415	511	0.92
Transmembrane Helix	512	533	0.86
Non-Cytoplasmic	534	568	0.93
Transmembrane Helix	569	591	0.86
Cytoplasmic	592	617	0.90
Transmembrane Helix	618	639	0.94
Non-Cytoplasmic	640	677	0.93
Transmembrane Helix	678	699	0.94
Cytoplasmic	700	1129	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSKASQRY RGIRRNASQC YLYQESLLLN LDDSFSADET GDSNDPEQIF QNIQFQKDLM  60
   61 ANIRCRPWTM GQKLRALRQA KNIVLKFEGR LTRTRGYQAA GAELWRKFAR LACNFVVIFI 120
  121 PWEMRIKKIE SHFGSGVASY FIFLRWLFGI NIVLTIMTGA FIVIPEVIAG QPFGSTARKT 180
  181 IPKEQVSSAQ DLDTVWSLGG YLQYSVLFYG YYGRERKIGR AGYRLPLAYF LVGMAVFAYS 240
  241 FIILLKRMAK NSRTSLASAS NENYTFCWRV FCAWDYLIGN PEAAESKTAA IVNSIREAIL 300
  301 EEQEKKKSKN LAVTICLRII ANILVLLSLA GSIYLIYFVV DRSQKLEQSK KELTLWEKNE 360
  361 VSVVVSLVTM IAPSAFDLIA ALEMYHPRTT LRFQLARVLV LYLGNLYSLI IALLDKVNSM 420
  421 SIEEMATKNN TSHWIDSTTF FATRTAPEEE KWSTSRPGMG LRRNNTWALE ETSISAYTMP 480
  481 LIKANKTSLH TQSPQDQCWE TYVGQEMLKL SIIDMLFTVA SILLIDFFRG LFVRYLSDYW 540
  541 CWDLESKFPE YGEFKIAENV LHLVYNQGMI WMGAFFSPCL PAFNVLKLIG LMYLRSWAVL 600
  601 TCNVPHQQVF RASRSNNFYL AMLLFMLFLC MLPTIFAIVR YKPSLNCGPF SGQEKIYDIV 660
  661 SETIEKDFPV WFGSVVGHIS SPVVILPAVL LLFMLIYYLQ SIARSLKLSN HQLKMQIQNA 720
  721 RSEDKKKVAQ MVEGKXXXXX XXXXXXXXXX XXXXXXXXXX XXAARIQTQE ESTKKLPNDS 780
  781 DLTSQLSSAH SGTPQNNGNV AHFDSGSSKS GRIETVAQSM PQSPRPGDRA PSSPLPGVPK 840
  841 SRLEHETNRY LHGLCASTSD LHRNRSRTPM TFTTHIEDVH SEPLFRKDFQ QINPPHRGPQ 900
  901 ASTLLAQGPR PHAPRYYVIN ECDSYKKKHL NVWPERHFKI DASGDIVELY PRNVRQYASR 960
  961 VPRQPPSPQL SEEEEETPSR DWIKRSLPPR SLIDLRRAPH FYIGERSESQ TRDPEHQGRV1020
 1021 HYKSWNEDFE GHLERPAYVP RKPRSRNFQY PQPPLKPRGK PRFEPSLTES DSVSAASSSD1080
 1081 QQNSSADQYL QVTHSQGRFP RSVGQPSRRK AKSGQELTVD LDDLICSDV