YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4336152
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	140	0.68
Transmembrane Helix	141	162	0.78
Non-Cytoplasmic	163	229	0.56
Transmembrane Helix	230	254	0.84
Cytoplasmic	255	363	0.88
Transmembrane Helix	364	384	0.83
Non-Cytoplasmic	385	395	0.74
Transmembrane Helix	396	419	0.93
Cytoplasmic	420	793	0.87
Transmembrane Helix	794	812	0.73
Non-Cytoplasmic	813	826	0.66
Transmembrane Helix	827	847	0.71
Cytoplasmic	848	856	0.59
Transmembrane Helix	857	876	0.62
Non-Cytoplasmic	877	914	0.55
Transmembrane Helix	915	939	0.83
Cytoplasmic	940	956	0.55
Transmembrane Helix	957	972	0.47
Non-Cytoplasmic	973	989	0.75
Transmembrane Helix	990	1012	0.87
Cytoplasmic	1013	1331	0.84
Transmembrane Helix	1332	1353	0.85
Non-Cytoplasmic	1354	1369	0.74
Transmembrane Helix	1370	1394	0.85
Cytoplasmic	1395	1429	0.76
Transmembrane Helix	1430	1452	0.87
Non-Cytoplasmic	1453	1531	0.86
Transmembrane Helix	1532	1554	0.93
Cytoplasmic	1555	1615	0.97
Transmembrane Helix	1616	1636	0.90
Non-Cytoplasmic	1637	1651	0.87
Transmembrane Helix	1652	1671	0.90
Cytoplasmic	1672	1683	0.75
Transmembrane Helix	1684	1701	0.65
Non-Cytoplasmic	1702	1744	0.54
Transmembrane Helix	1745	1772	0.74
Cytoplasmic	1773	1787	0.62
Transmembrane Helix	1788	1804	0.62
Non-Cytoplasmic	1805	1837	0.54
Transmembrane Helix	1838	1860	0.82
Cytoplasmic	1861	2353	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGARAADE VRVPLGAPPP GPAALVGASP ESPGAPGREA ERGSELGVSP SESPAAERGA  60
   61 ELGADEEQRV PYPALAATVF FCLGQTTRPR SWCLRLVCNP WFEHVSMLVI MLNCVTLGMF 120
  121 RPCEDVECGS ERCNILEAFD AFIFAFFAVE MVIKMVALGL FGQKCYLGDT WNRLDFFIVV 180
  181 AGMMEYSLDG HNVSLSAIRT VRVLRPLRAI NRVPSMRILV TLLLDTLPML GNVLLLCFFV 240
  241 FFIFGIVGVQ LWAGLLRNRC FLDSAFVRNN NLTFLRPYYQ TEEGEENPFI CSSRRDNGMQ 300
  301 KCSHIPGRRE LRMPCTLGWE AYTQPQAEGV GAARNACINW NQYYNVCRSG DSNPHNGAIN 360
  361 FDNIGYAWIA IFQVITLEGW VDIMYYVMDA HSFYNFIYFI LLIIVGSFFM INLCLVVIAT 420
  421 QFSETKQRES QLMREQRARH LSNDSTLASF SEPGSCYEEL LKYVGHIFRK VKRRSLRLYA 480
  481 RWQSRWRKKV DPSAVQGQGP GHRQRRAGRH TASVHHLVYH HHHHHHHHYH FSHGSPRRPG 540
  541 PEPGACDTRL VRAGAPPSPP SPGRGPPDAE SVHSIYHADC HIEGPQERAR VAHAAATAAA 600
  601 SLRLATGLGT MNYPTILPSG VGSGKGSTSP GPKGKWAGGP PGTGGHGPLS LNSPDPYEKI 660
  661 PHVVGEHGLG QAPGHLSGLS VPCPLPSPPA GTLTCELKSC PYCTRALEDP EGELSGSESG 720
  721 DSDGRGVYEF TQDVRHGDRW DPTRPPRATD TPGPGPGSPQ RRAQQRAAPG EPGWMGRLWV 780
  781 TFSGKLRRIV DSKYFSRGIM MAILVNTLSM GVEYHEQPEE LTNALEISNI VFTSMFALEM 840
  841 LLKLLACGPL GYIRNPYNIF DGIIVVISVW EIVGQADGGL SVLRTFRLLR VLKLVRFLPA 900
  901 LRRQLVVLVK TMDNVATFCT LLMLFIFIFS ILGMHLFGCK FSLKTDTGDT VPDRKNFDSL 960
  961 LWAIVTVFQI LTQEDWNVVL YNGMASTSSW AALYFVALMT FGNYVLFNLL VAILVEGFQA1020
 1021 EGDANRSDTD EDKTSVHFEE DFHKLRELQT TELKMCSLAV TPNGHLEGRG SLSPPLIMCT1080
 1081 AATPMPTPKS SPFLDAAPSL PDSRRGSSSS GDPPLGDQKP PASLRSSPCA PWGPSGAWSS1140
 1141 RRSSWSSLGR APSLKRRGQC GERESLLSGE GKGSTDDEAE DGRAAPGPRA TPLRRAESLD1200
 1201 PRPLRPAALP PTKCRDRDGQ VVALPSDFFL RIDSHREDAA ELDDDSEDSC CLRLHKVLEP1260
 1261 YKPQWCRSRE AWALYLFSPQ NRFRVSCQKV ITHKMFDHVV LVFIFLNCVT IALERPDIDP1320
 1321 GSTERVFLSV SNYIFTAIFV AEMMVKVVAL GLLSGEHAYL QSSWNLLDGL LVLVSLVDIV1380
 1381 VAMASAGGAK ILGVLRVLRL LRTLRPLRVI SRAPGLKLVV ETLISSLRPI GNIVLICCAF1440
 1441 FIIFGILGVQ LFKGKFYYCE GPDTRNISTK AQCRAAHYRW VRRKYNFDNL GQALMSLFVL1500
 1501 SSKDGWVNIM YDGLDAVGVD QQPVQNHNPW MLLYFISFLL IVSFFVLNMF VGVVVENFHK1560
 1561 CRQHQEAEEA RRREEKRLRR LERRRRSTFP SPEAQRRPYY ADYSPTRRSI HSLCTSHYLD1620
 1621 LFITFIICVN VITMSMEHYN QPKSLDEALK YCNYVFTIVF VFEAALKLVA FGFRRFFKDR1680
 1681 WNQLDLAIVL LSLMGITLEE IEMSAALPIN PTIIRIMRVL RIARVLKLLK MATGMRALLD1740
 1741 TVVQALPQVG NLGLLFMLLF FIYAALGVEL FGRLECSEDN PCEGLSRHAT FSNFGMAFLT1800
 1801 LFRVSTGDNW NGIMKDTLRE CSREDKHCLS YLPALSPVYF VTFVLVAQFV LVNVVVAVLM1860
 1861 KHLEESNKEA REDAELDAEI ELEMAQGPGS ARRVDADRPP LPQESPGARD APNLVARKVS1920
 1921 VSRMLSLPND SYMFRPVVPA SAPHPRPLQE VEMETYGAGT PLGSVASVHS PPAESCASLQ1980
 1981 IPLAVSSPAR SGEPLHALSP RGTARSPSLS RLLCRQEAVH TDSLEGKIDS PRDTLDPAEP2040
 2041 GEKTPVRPVT QGGSLQSPPR SPRPASVRTR KHTFGQHCVS SRPAAPGGEE AEASDPADEE2100
 2101 VSHITSSACP WQPTAEPHGP EASPVAGGER DLRRLYSVDA QGFLDKPGRA DEQWRPSAEL2160
 2161 GSGEPGEAKA WGPEAEPALG ARRKKKMSPP CISVEPPAED EGSARPSAAE GGSTTLRRRT2220
 2221 PSCEATPHRD SLEPTEGSGA GGDPAAKGER WGQASCRAEH LTVPSFAFEP LDLGVPSGDP2280
 2281 FLDGSHSVTP ESRASSSGAI VPLEPPESEP PMPVGDPPEK RRGLYLTVPQ CPLEKPGSPS2340
 2341 ATPAPGGGAD DPV