YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27894370|ref|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPSLLLLL LLLLLCVSVV RPRGLLCGSF PEPCANGGTC LSLSLGQGTC QCAPGFLGET  60
   61 CQFPDPCQNA QLCQNGGSCQ ALLPAPLGLP SSPSPLTPSF LCTCLPGFTG ERCQAKLEDP 120
  121 CPPSFCSKRG RCHIQASGRP QCSCMPGWTG EQCQLRDFCS ANPCVNGGVC LATYPQIQCH 180
  181 CPPGFEGHAC ERDVNECFQD PGPCPKGTSC HNTLGSFQCL CPVGQEGPRC ELRAGPCPPR 240
  241 GCSNGGTCQL MPEKDSTFHL CLCPPGFIGP GCEVNPDNCV SHQCQNGGTC QDGLDTYTCL 300
  301 CPETWTGWDC SEDVDECEAQ GPPHCRNGGT CQNSAGSFHC VCVSGWGGTS CEENLDDCIA 360
  361 ATCAPGSTCI DRVGSFSCLC PPGRTGLLCH LEDMCLSQPC HGDAQCSTNP LTGSTLCLCQ 420
  421 PGYSGPTCHQ DLDECLMAQQ GPSPCEHGGS CLNTPGSFNC LCPPGYTGSR CEADHNECLS 480
  481 QPCHPGSTCL DLLATFHCLC PPGLEGQLCE VETNECASAP CLNHADCHDL LNGFQCICLP 540
  541 GFSGTRCEED IDECRSSPCA NGGQCQDQPG AFHCKCLPGF EGPRCQTEVD ECLSDPCPVG 600
  601 ASCLDLPGAF FCLCPSGFTG QLCEVPLCAP NLCQPKQICK DQKDKANCLC PDGSPGCAPP 660
  661 EDNCTCHHGH CQRSSCVCDV GWTGPECEAE LGGCISAPCA HGGTCYPQPS GYNCTCPTGY 720
  721 TGPTCSEEMT ACHSGPCLNG GSCNPSPGGY YCTCPPSHTG PQCQTSTDYC VSAPCFNGGT 780
  781 CVNRPGTFSC LCAMGFQGPR CEGKLRPSCA DSPCRNRATC QDSPQGPRCL CPTGYTGGSC 840
  841 QTLMDLCAQK PCPRNSHCLQ TGPSFHCLCL QGWTGPLCNL PLSSCQKAAL SQGIDVSSLC 900
  901 HNGGLCVDSG PSYFCHCPPG FQGSLCQDHV NPCESRPCQN GATCMAQPSG YLCQCAPGYD 960
  961 GQNCSKELDA CQSQPCHNHG TCTPKPGGFH CACPPGFVGL RCEGDVDECL DQPCHPTGTA1020
 1021 ACHSLANAFY CQCLPGHTGQ WCEVEIDPCH SQPCFHGGTC EATAGSPLGF ICHCPKGFEG1080
 1081 PTCSHRAPSC GFHHCHHGGL CLPSPKPGFP PRCACLSGYG GPDCLTPPAP KGCGPPSPCL1140
 1141 YNGSCSETTG LGGPGFRCSC PHSSPGPRCQ KPGAKGCEGR SGDGACDAGC SGPGGNWDGG1200
 1201 DCSLGVPDPW KGCPSHSRCW LLFRDGQCHP QCDSEECLFD GYDCETPPAC TPAYDQYCHD1260
 1261 HFHNGHCEKG CNTAECGWDG GDCRPEDGDP EWGPSLALLV VLSPPALDQQ LFALARVLSL1320
 1321 TLRVGLWVRK DRDGRDMVYP YPGARAEEKL GGTRDPTYQE RAAPQTQPLG KETDSLSAGF1380
 1381 VVVMGVDLSR CGPDHPASRC PWDPGLLLRF LAAMAAVGAL EPLLPGPLLA VHPHAGTAPP1440
 1441 ANQLPWPVLC SPVAGVILLA LGALLVLQLI RRRRREHGAL WLPPGFTRRP RTQSAPHRRR1500
 1501 PPLGEDSIGL KALKPKAEVD EDGVVMCSGP EEGEEVGQAE ETGPPSTCQL WSLSGGCGAL1560
 1561 PQAAMLTPPQ ESEMEAPDLD TRGPDGVTPL MSAVCCGEVQ SGTFQGAWLG CPEPWEPLLD1620
 1621 GGACPQAHTV GTGETPLHLA ARFSRPTAAR RLLEAGANPN QPDRAGRTPL HAAVAADARE1680
 1681 VCQLLLRSRQ TAVDARTEDG TTPLMLAARL AVEDLVEELI AAQADVGARD KWGKTALHWA1740
 1741 AAVNNARAAR SLLQAGADKD AQDNREQTPL FLAAREGAVE VAQLLLGLGA ARELRDQAGL1800
 1801 APADVAHQRN HWDLLTLLEG AGPPEARHKA TPGREAGPFP RARTVSVSVP PHGGGALPRC1860
 1861 RTLSAGAGPR GGGACLQART WSVDLAARGG GAYSHCRSLS GVGAGGGPTP RGRRFSAGMR1920
 1921 GPRPNPAIMR GRYGVAAGRG GRVSTDDWPC DWVALGACGS ASNIPIPPPC LTPSPERGSP1980
 1981 QLDCGPPALQ EMPINQGGEG KK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle