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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|59891399, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGGVGLII GSFPFRFYGL NTIGKIVYIL QIVLLTLFGS CMLFRFIKYP STIKDSWNHH  60
   61 LEKLFIATCL LSLSTFIDML AIYAYADTGE WMVWVIRILY YIFVAVAFIY CVSAFFTIFN 120
  121 NHVYTIETAS PAWILPIFPP MICGVIAGAV NATQPARQLK NMVIFGILFF FFFFFFHIST 180
  181 AMVVASEIAK VASKTARDIA GCFTCQCGTQ FDNVERIVQH FKECRYRDET CKDDDIVVYE 240
  241 PSSFVQDEKK DKPIIVEAAS EATSEEACNS SKERQLPALS ALSALSTLTT SANDDLWTAR 300
  301 LIWQSTNDTK LDNSPSSNYT DLNHKLANYG LSILSIHALM CVECECLLNV IHTAQHMQIV 360
  361 HKLELNEDLL WFQELRTLKL KSPTNVLQTH SSQTHVYPYI RGLPVLLNGY ECVPCTKNGT 420
  421 GFVHAIMDTF RHHVRRTHGK VIKLENCIRR TALQTVKNKY AQRCQFFKVD YVPLNGGEEE 480
  481 EEEEGEEKED AQNIKERMVD FCFSKFMEKN QQRREQQDKG ENKKRQDDVD QATDNNTNTI 540
  541 LEDDEKDNDE EEEEEIVNAR EKNLLNQQFN WTAIVKKLGE NWDQLVRFEY TNGIVTLDTI 600
  601 VNQLIRYYYR GFRHLSGMTM GMRRMFTQGG SYSAQERGLC RLEQKDTVVR YAQSAALYLI 660
  661 FLLRRPSADS GIRRHLEAMC GATVERKEGG SNSSSNISNV ANFDSAEDDN DNDNDNDRDS 720
  721 NNNNNNNNTN TDDDDKLAYL ELHEALKLAF LQQYDFSKNV QDLEIMEFLA CMSLHKDGTS 780
  781 KYAYEISACF APLIYTCRLV AACELQRLID EKQIDLLSIP SFQTAGSIAY AHVFCFITLG 840
  841 QRNLYDVLYE TQKVVRDIIR TEGYANTLQG LSPSTVLFQP RSNSMYPCIG DAFNNMVRLD 900
  901 LSELTALYEG MFAKVQDLLK ELCFDMNVEK LLPISLLRSI GDDINNSKLG YSFFKESIEI 960
  961 RSSHSVLLRT ILKNSELCHR FFPSMSKKDL TKLFGGVSDQ QRNECDNYSN HYNDNSNDND1020
 1021 NDVFLKLHWS KSAIKKYETK ASIFNELLFC LVYISAGQPA RAQEMVYWTL RNGKYKTREL1080
 1081 YLMFGRLMIY SRYDKTRNMK FAEKPIPRFL SEPLSILALR YYVLVRPLEA LMKYVTTADR1140
 1141 SKVAVYLDFM FVIAGERLQR DLPYRIFPKA TYQCIQKPLG FRNYRHIAHY FKEKNIEEEM1200
 1201 TRESYFDLQA GHTRNTALYI YGRTMDNLHY LPSDYFANFF RASYKWQELL QIRDNPTHGL1260
 1261 LVETKHPFIK RVDQLEEALN EKLARLVGEQ MVEGDKEKDK TNEEKNKDEV KAEMTQPVVN1320
 1321 QDSHDLQDQL ATTPTAPTAF HYRPGLLQPS QTSVQHCCWA LSQYYGLEAK FRSLKQFQSV1380
 1381 YFSLLNRMNL ITVLPTGGGK SLSFLIPALI EKKRQTPGKV MNMVTLVLVP MMSLRQDMML1440
 1441 RVNEKGLLVC SGNWTAFKDV RLTLETQLPD LFILTYESAL TNSGLRFFES LATLGRLARV1500
 1501 VIDEAHLLLT SGAWRTALSR ASRLSGLYAP LHLLSATFPR QLEMVARQTF CTNFYVLRET1560
 1561 STARENIFYF LHPYDNTEFL LDLRTLMKRT KVFEGDGRAI IFCRTKKDVE YIHRRLHQSD1620
 1621 LFAHTHVTIY TGDVSDEERQ MNFDAFRNAN GKTRIMIATK AFGLGINYMG VRLVVHYGLP1680
 1681 ASSMDYVQET GRAGRDGKYA IAALFYEKYD STWSSYVEDS MKNFLNDNTM CVRSFLASEM1740
 1741 DGECVCCASF ANCVYCSRCS DSLLGEESTV STMYGVKPTL PETPKPAIAT HSRYNASFSS1800
 1801 SPPPQPGNSS GMSAMNTNTT STTPVSLSEL SEITLFPSSV SPTWKKSFGN ANTNLKYGLE1860
 1861 DMSLSHRRGH KRTYDEHLNN VQQGVNHDMN RVHGSVGGMS GIVGIGIGIG DGDGDGDVDS1920
 1921 RTIHFAEYKS RVQAVKKQWV DSTDISAQLE RFFRVYKDEC LSCTLGNPDT EIRAHTGKAC1980
 1981 PVRLSTCYKC GKADHNLREC KLRIRFQGLC LFCGLTKFEH ADSDMAYTSD CRSWARKANL2040
 2041 ISLVYYAWNN VQYRRTIADK FLQGDVRDQA FYGFVCCSTT TNSAFVLVIH YLLSDVLQIM2100
 2101 

YRC Informatics Platform - Version 3.0
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