YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YTFL_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSILVILC LIAVSAFFSM SEISLAASRK IKLKLLADEG NINAQRVLNM QENPGMFFTV  60
   61 VQIGLNAVAI LGGIVGDAAF SPAFHSLFSR YMSAELSEQL SFILSFSLVT GMFILFADLT 120
  121 PKRIGMIAPE AVALRIINPM RFCLYVCTPL VWFFNGLANI IFRIFKLPMV RKDDITSDDI 180
  181 YAVVEAGALA GVLRKQEHEL IENVFELESR TVPSSMTPRE NVIWFDLHED EQSLKNKVAE 240
  241 HPHSKFLVCN EDIDHIIGYV DSKDLLNRVL ANQSLALNSG VQIRNTLIVP DTLTLSEALE 300
  301 SFKTAGEDFA VIMNEYALVV GIITLNDVMT TLMGDLVGQG LEEQIVARDE NSWLIDGGTP 360
  361 IDDVMRVLDI DEFPQSGNYE TIGGFMMFML RKIPKRTDSV KFAGYKFEVV DIDNYRIDQL 420
  421 LVTRIDSKAT ALSPKLPDAK DKEESVA

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.61
Transmembrane Helix	5	26	0.62
Cytoplasmic	27	55	0.63
Transmembrane Helix	56	80	0.78
Non-Cytoplasmic	81	99	0.66
Transmembrane Helix	100	120	0.92
Cytoplasmic	121	140	0.66
Transmembrane Helix	141	162	0.89
Non-Cytoplasmic	163	447	0.74